View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7551_high_2 (Length: 576)
Name: NF7551_high_2
Description: NF7551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7551_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 463; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 25 - 564
Target Start/End: Original strand, 23030716 - 23031255
Alignment:
| Q |
25 |
gaaaattgcaacaaaatttgcactacatataaagtgatacgtaataattatggtgattgtgnnnnnnngtttataggttgtgtgcaaatgggagcaggtg |
124 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
23030716 |
gaaaattgcaacaaaatttgcactacatataaagtgatacgtaataattattgtgattgtgtttttttctttataggttgtgtgcaaatgggagcaggtg |
23030815 |
T |
|
| Q |
125 |
gtagagcctctaatcctccatcacaaaggaaaatagagaatgatgaacatttgaagagggttccaactacaaaaccaccattcactcttggtgaagtcaa |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23030816 |
gtagagcctctaatcctccatcacaaaggaaaatagagaatgatgaacatttgaagagggttccaactacaaaaccaccattcactcttggtgaagtcaa |
23030915 |
T |
|
| Q |
225 |
gaaagcaattccaccacattgttttaaccgttcattgattagatcattttcctatgtcattgttgaccttaccatagcatcaatccttgtctacatagcc |
324 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
23030916 |
gaaagcaattccaccacattgttttcaccgttcattgattagatcattttcctatgtcattgttgaccttaccatagcatcaatccttgcctatatagcc |
23031015 |
T |
|
| Q |
325 |
acaaattattttcctacccttccacataacctctcatttttggcgtgggccgtttattgggtcatccaaggatgcattctaaccggagtttgggtcattg |
424 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
23031016 |
acaaattactttcctacccttccacataacctctcatttttggcgtggcccgtttattgggccatccaaggatgcattctaaccggagtttgggtcattg |
23031115 |
T |
|
| Q |
425 |
cacacgaatgtggccaccatgcatttagtaattatcaatgggtcgacgatttagttggccttgttcttcattcatgtctcttggttccttatttttcgtg |
524 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||| |||||||||||||| |
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| T |
23031116 |
cacatgaatgtggccatcatgcatttagtaattatcaatgggtcgacgatttagttggccttgtccttcattcttgcctcttggtaccttatttttcgtg |
23031215 |
T |
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| Q |
525 |
gaaatatagtcatcgccgccaccactctaacacaggttct |
564 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
23031216 |
gaaatatagtcatcgccgccaccactctaacacaggttct |
23031255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 465
Target Start/End: Original strand, 50593858 - 50593934
Alignment:
| Q |
389 |
tccaaggatgcattctaaccggagtttgggtcattgcacacgaatgtggccaccatgcatttagtaattatcaatgg |
465 |
Q |
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||||||| |||||||| ||||| |||||||| || || || |||||||| ||||||||||||||||| || |||||| |
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| T |
50593858 |
tccaaggttgcattctcaccggtgtttgggtgatagctcatgaatgtggtcaccatgcatttagtaactaccaatgg |
50593934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 388 - 564
Target Start/End: Original strand, 37019912 - 37020088
Alignment:
| Q |
388 |
atccaaggatgcattctaaccggagtttgggtcattgcacacgaatgtggccaccatgcatttagtaattatcaatgggtcgacgatttagttggccttg |
487 |
Q |
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|||||||| ||||| || ||||| ||||||||||||||||| || ||||||||||||||||| ||| | ||||||||| | || ||| |||||||||| |
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| T |
37019912 |
atccaaggttgcatccttaccggtgtttgggtcattgcacatgagtgtggccaccatgcattcagtgactatcaatggcttgatgatacagttggcctta |
37020011 |
T |
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| Q |
488 |
ttcttcattcatgtctcttggttccttatttttcgtggaaatatagtcatcgccgccaccactctaacacaggttct |
564 |
Q |
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|||| || || || | || ||||| ||||| |||||||| || |||||||||||||| || ||||| |||||| |
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| T |
37020012 |
ttctccactctgcccttcttgtgccttacttttcatggaaatacagccatcgccgccaccattccaacaccggttct |
37020088 |
T |
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