View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7551_high_21 (Length: 257)
Name: NF7551_high_21
Description: NF7551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7551_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 51301664 - 51301904
Alignment:
| Q |
1 |
ttcaatctaccttatgaacaaaaaaggtaaagatcaacacaggatgatacaagataccaacaaccaaagtacgatgtgcaagagactcgaaaattcaaat |
100 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51301664 |
ttcaatctaccttatgatcaaaaaaggtaaagatcaacacaggatgatacaagataccaacaaccaaagtacgatgtgcaagagactcgaaaattcaaat |
51301763 |
T |
|
| Q |
101 |
gatgaacctactggatagtacctccacaaaaccatgtatgtcttctagatatctccgtatgagtttaaccacattatgccgcagcaacatgttagaattc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51301764 |
gatgaacctactggatagtacctccacaaaaccatgtatgtcttctagatatcttcgtatgagtttaaccacattatgccgcagcaacatgttagaattc |
51301863 |
T |
|
| Q |
201 |
aatcgctgcctccttagatcaagacatcgatacctaaaaat |
241 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||| |
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| T |
51301864 |
aattgctgcctccttagatcaagacatcgatacctaaaaat |
51301904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 50015640 - 50015877
Alignment:
| Q |
1 |
ttcaatctaccttatgaacaaaaaaggtaaagatcaacacaggatgatacaagataccaacaaccaaagtacgatgtgcaagagactcgaaaattcaaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||| ||||||||||||||| |||||| |||||||||| |
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| T |
50015640 |
ttcaatctaccttatgaacaaaaaaggtaaagatcaacacaggat---accaaataccaacaaccgaagtacgatgtgcaatagactcaaaaattcaaaa |
50015736 |
T |
|
| Q |
101 |
gatgaacctactggatagtacctccacaaaaccatgtatgtcttctagatatctccgtatgagtttaaccacattatgccgcagcaacatgttagaattc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
50015737 |
gatgaacctactggatagtacctccacaaaaccatgtatgtcttctagatatcttcgcatgagtttaaccacattatgccgcagcaacatgttagaattc |
50015836 |
T |
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| Q |
201 |
aatcgctgcctccttagatcaagacatcgatacctaaaaat |
241 |
Q |
| |
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| | | |||||||||||||||||| |||||||||||||||| |
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| T |
50015837 |
atttgttgcctccttagatcaagatatcgatacctaaaaat |
50015877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 18854287 - 18854518
Alignment:
| Q |
1 |
ttcaatctaccttatgaacaaaaaaggtaaagatcaacacaggatgatacaagataccaacaaccaaagtacgatgtgcaagagactcgaaaattcaaat |
100 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||| |||||| || || | ||||||||||| ||||||||| ||||| |||| ||||||||||| |
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| T |
18854287 |
ttcaatctaccttacgaacaaaaa-ggtaaagatcgacacagcat---accaaataccaacaactaaagtacgacgtgca---gactaaaaaattcaaat |
18854379 |
T |
|
| Q |
101 |
gatgaacctactggatagtacctccacaaaaccatgtatgtcttctagatatctccgtatgagtttaaccacattatgccgcagcaacatgttagaattc |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
18854380 |
gatgaacctactggatagtacctcggcaaaaccatgtatgtcttctagatatcttcgtatgagtttaaccacattatgccgcagcaatatgttagaattc |
18854479 |
T |
|
| Q |
201 |
aatcgctgcctccttagatcaagacatcgatacctaaaa |
239 |
Q |
| |
|
| | | ||| ||||||||||||||||||||||||||||| |
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|
| T |
18854480 |
atttgttgcttccttagatcaagacatcgatacctaaaa |
18854518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 18842821 - 18843050
Alignment:
| Q |
1 |
ttcaatctaccttatgaacaaaaaaggtaaagatcaacacaggatgatacaagataccaacaaccaaagtacgatgtgcaagagactcgaaaattcaaat |
100 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||| |||||| || || | ||||||||||||||||||||| ||||| |||| ||||||||||| |
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| T |
18842821 |
ttcaacctaccttatgaacaaaaa-ggtaaagatcgacacagcat---accaaataccaacaaccaaagtacgacgtgca---gact--aaaattcaaat |
18842911 |
T |
|
| Q |
101 |
gatgaacctactggatagtacctccacaaaaccatgtatgtcttctagatatctccgtatgagtttaaccacattatgccgcagcaacatgttagaattc |
200 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
18842912 |
gatgaacctactagatagtacctcgacaaaaccatgtatgtcttctagatatcttcgtatgagtttaaccacattatggcgcagcaatatgttagaattc |
18843011 |
T |
|
| Q |
201 |
aatcgctgcctccttagatcaagacatcgatacctaaaa |
239 |
Q |
| |
|
| | | ||| ||||||||||||||||||||||||||||| |
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| T |
18843012 |
atttgttgcttccttagatcaagacatcgatacctaaaa |
18843050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 44112697 - 44112934
Alignment:
| Q |
1 |
ttcaatctaccttatgaacaaaaaaggtaaagatcaacacaggatgatacaagataccaacaaccaaagtacgatgtgcaagagactcgaaaattcaaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||| ||||||||||||||| |||||| ||| |||||| |
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| T |
44112697 |
ttcaatctaccttatgaacaaaaaaggtaaagatcaacacaggat---accaaataccaacaaccgaagtacgatgtgcaatagactcaaaatttcaaaa |
44112793 |
T |
|
| Q |
101 |
gatgaacctactggatagtacctccacaaaaccatgtatgtcttctagatatctccgtatgagtttaaccacattatgccgcagcaacatgttagaattc |
200 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44112794 |
gatgaacctgcaggatagtacctccacaaaaccatgtatgtcttctagatatcttcgtatgagtttaaccacattatgccgcagcaacatgttagaattc |
44112893 |
T |
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| Q |
201 |
aatcgctgcctccttagatcaagacatcgatacctaaaaat |
241 |
Q |
| |
|
| | | |||||||||||||||||| |||||||||||||||| |
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| T |
44112894 |
atttgttgcctccttagatcaagatatcgatacctaaaaat |
44112934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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