View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7551_high_24 (Length: 250)
Name: NF7551_high_24
Description: NF7551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7551_high_24 |
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| [»] chr6 (3 HSPs) |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 31938784 - 31938544
Alignment:
| Q |
10 |
aagaatattcaggccctggaattgtatgaatgaatgttcatacaactgatgacattattgatcatgatttaatattcacatttcggtgatgattttgcaa |
109 |
Q |
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| T |
31938784 |
aagaatattcaggccatggaattgtatgaatgaatgttcgtacagctgatgacattattgatcatgatttaatattcacatttcggtgatgattttgcaa |
31938685 |
T |
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| Q |
110 |
gatttgatttatctgataacaaaaatatatggcaaatgggaatgtttaaaaacagtgattgattgaatgacacttcaactcctatactatttttcttgct |
209 |
Q |
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| T |
31938684 |
gatttgatttatctgataacaaaaaaatatggcaaatgggaatgtttaaaaacagtgtttgattgaatgacacttcaactcctatactatttttcttgtt |
31938585 |
T |
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| Q |
210 |
aaattgaaagtattaagtttggtttaggaaaacagaacaca |
250 |
Q |
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| T |
31938584 |
aaattgaaagtattaagattggtttaggaaaacagaacaca |
31938544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 106
Target Start/End: Complemental strand, 13535049 - 13534969
Alignment:
| Q |
26 |
tggaattgtatgaatgaatgttcatacaactgatgacattattgatcatgatttaatattcacatttcggtgatgattttg |
106 |
Q |
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| T |
13535049 |
tggaattgtatgattgaatgtttgtacaattgatgacattatttataatgatttatgattcacactttggtgatgattttg |
13534969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 32671582 - 32671548
Alignment:
| Q |
13 |
aatattcaggccctggaattgtatgaatgaatgtt |
47 |
Q |
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| T |
32671582 |
aatattcaggccctggaattgtatgaatgaatgtt |
32671548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 10 - 184
Target Start/End: Complemental strand, 9389140 - 9388971
Alignment:
| Q |
10 |
aagaatattcaggccctggaattgtatgaatgaatgttcatacaactgatgacattattgatcatgatttaatattcacatttcggtgatgattttgcaa |
109 |
Q |
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||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
9389140 |
aagaatattcaagccctggaattgtatgaatgaatgtttgtacaactgatgacattatttataatgatttaatattcacatttcggtgatgattttgcaa |
9389041 |
T |
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| Q |
110 |
gatttgatttatctgataacaaaaatatatggcaaatgggaatgttt-aaaaacagtgattgattgaatgacactt |
184 |
Q |
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| T |
9389040 |
g-----atttatctgaaaacaaaca-gtatggcaaatagaaatgtttgaaaaactgtgattgatttaatgacactt |
9388971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 19810358 - 19810430
Alignment:
| Q |
17 |
ttcaggccctggaattgtatgaatgaatgttcatacaactgatgacattattgatcatgatttaatattcaca |
89 |
Q |
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| T |
19810358 |
ttcaggccctggaattgtatgattgaatgtttgtacaattgatgatattatttataatgacttaagattcaca |
19810430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 184 - 250
Target Start/End: Complemental strand, 1336766 - 1336700
Alignment:
| Q |
184 |
tcaactcctatactatttttcttgctaaattgaaagtattaagtttggtttaggaaaacagaacaca |
250 |
Q |
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| T |
1336766 |
tcaattcctatactatttgtcttgttaaattgaaagtattaagtttggtttaggaaaacaaaacaca |
1336700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 1336938 - 1336890
Alignment:
| Q |
13 |
aatattcaggccctggaattgtatgaatgaatgttcatacaactgatga |
61 |
Q |
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| T |
1336938 |
aatattcagggcctggaattgtatgaatgaatgttcctacaactgatga |
1336890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 1336864 - 1336816
Alignment:
| Q |
136 |
atatggcaaatgggaatgtttaaaaacagtgattgattgaatgacactt |
184 |
Q |
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| T |
1336864 |
atatggcaaatggaaatgtttaaaaactatgattgatttactgacactt |
1336816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 114
Target Start/End: Complemental strand, 5638983 - 5638949
Alignment:
| Q |
80 |
aatattcacatttcggtgatgattttgcaagattt |
114 |
Q |
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| T |
5638983 |
aatattcacacttcggtgatgattttgcaagattt |
5638949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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