View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7551_high_3 (Length: 573)
Name: NF7551_high_3
Description: NF7551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7551_high_3 |
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| [»] scaffold0179 (1 HSPs) |
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| [»] scaffold0177 (1 HSPs) |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: scaffold0179 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 18 - 568
Target Start/End: Complemental strand, 2093 - 1544
Alignment:
| Q |
18 |
gttatcaactagtctgtaagtttttcttgagtatatacagcataattcattttttcttatgttgctgccaaggtttagagagaaattggaagcagttgat |
117 |
Q |
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| T |
2093 |
gttatcaactagtctgtaagtttttcttgagtatatacagcataattcattttttcttatgttgctgccaaggtttagagagaaattggaagcagttgat |
1994 |
T |
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| Q |
118 |
gtgcatatcaatattaccaatcctcaaatttcattccaatttaaatatgaagaattagagtaacaaaaagtatcagcaatgaagtaggtaattaattact |
217 |
Q |
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| T |
1993 |
gtgcatatcaatattaccaatcctcaaatttcattccaatttaaatatgaagaattagagtaacaaaaagtatcagcaatgaagtaggtaattaattact |
1894 |
T |
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| Q |
218 |
aaagtagaagaagagaagaacttagaatgaagaatgccacatatgtcatccatcctatcaatatacaagtatgaagaatcgcaacggaaccataagagtt |
317 |
Q |
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| T |
1893 |
aaagtagaagaagagaagaacttagaaagatgaatgccacatatgtcatccatcctatcaatatacaagtatgaagaatcgcaacggaaccataagagtt |
1794 |
T |
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| Q |
318 |
agatgaggaactcaatgacgcactagagctagatgaggnnnnnnnnttacaccaaattcaacctactaaaaacctgtcgagacacgaagtattacaaaag |
417 |
Q |
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| T |
1793 |
agatgaggaactcaatgacgcactagagctagatgaggaaaaaaaattacaccaaattcaacctactaaaaacctgtcaagacaccaagtattacatagg |
1694 |
T |
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| Q |
418 |
ccttacgccacctaatctaaactagaaagtaagcaaaaccaaaattaaagatacattatccttaattgtgatagtaaagaaaagaaaaacataattactc |
517 |
Q |
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| T |
1693 |
ccttacgccacctaatctaaactagaaagtaatcaaaaccaaaattaaagatacattatccttaactgtgatagtaaagaaaag-aaaacataattattc |
1595 |
T |
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| Q |
518 |
taacactaagctatggtactccaagactagcaagattcatgaacaccaaac |
568 |
Q |
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| T |
1594 |
caacactaagctatggtactccaagactagcaagattcatgaacaccaaac |
1544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177 (Bit Score: 148; Significance: 8e-78; HSPs: 1)
Name: scaffold0177
Description:
Target: scaffold0177; HSP #1
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 324 - 567
Target Start/End: Complemental strand, 30204 - 29962
Alignment:
| Q |
324 |
ggaactcaatgacgcactagagctagatgaggnnnnnnnnttacaccaaattcaacctactaaaaacctgtcgagacacgaagtattacaaaagccttac |
423 |
Q |
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| T |
30204 |
ggaactcaatgagacactagagctagatgaggaaaaaaaattacaccaaattcaacctactaaaaacctgtcgagacaccaagtattatgaaacccttaa |
30105 |
T |
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| Q |
424 |
gccacctaatctaaactagaaagtaagcaaaaccaaaattaaagatacattatccttaattgtgatagtaaagaaaagaaaaacataattactctaacac |
523 |
Q |
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| T |
30104 |
gccacctaatctaaactagaaagtaagaaaaaccaaaattaaagggacattatccttaactatgatagtaaagaaaag-aaaacataattactccaatac |
30006 |
T |
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| Q |
524 |
taagctatggtactccaagactagcaagattcatgaacaccaaa |
567 |
Q |
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| T |
30005 |
taagctatggtactcctagactagcaagaatcatgaacaccaaa |
29962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 466 - 569
Target Start/End: Original strand, 118515 - 118618
Alignment:
| Q |
466 |
agatacattatccttaattgtgatagtaaagaaaagaaaaacataattactctaacactaagctatggtactccaagactagcaagattcatgaacacca |
565 |
Q |
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| T |
118515 |
agatacattatccttaactatgatagtaacgaaaagaaaaacataattactctaacactaagcaatggtactcctagactagcaagattcatgaacacca |
118614 |
T |
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| Q |
566 |
aact |
569 |
Q |
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|||| |
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| T |
118615 |
aact |
118618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 126 - 193
Target Start/End: Original strand, 15719278 - 15719345
Alignment:
| Q |
126 |
caatattaccaatcctcaaatttcattccaatttaaatatgaagaattagagtaacaaaaagtatcag |
193 |
Q |
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| T |
15719278 |
caattttaccaatcctcaaattgcattcgaatttaaatatgaagatttagagaaacaaaaagtatcag |
15719345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 161 - 260
Target Start/End: Original strand, 16701105 - 16701204
Alignment:
| Q |
161 |
aatatgaagaattagagtaacaaaaagtatcagcaatgaagtaggtaattaattactaaagtagaagaagagaagaacttagaatgaagaatgccacata |
260 |
Q |
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| T |
16701105 |
aatatgaagaattaaaacaacaaaaagtatcagcattgaaaaaggtaattaattactaaagtagcaagagagaagaacttagatggcagaatggcacata |
16701204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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