View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7551_low_1 (Length: 678)
Name: NF7551_low_1
Description: NF7551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7551_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 630; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 6 - 659
Target Start/End: Original strand, 45142103 - 45142756
Alignment:
| Q |
6 |
tttggtggtcgatggaggcttctctgttattaatagttgtgttcctactactattaaaaaataagcggtccaatttggaatgtgataaatatcctacatt |
105 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
45142103 |
tttggtggtcgatggaggcttttctgttattaatagttgtgtgcctactactattaaaaaataagtggtccaatttggaatgtgataaatatcctacatt |
45142202 |
T |
|
| Q |
106 |
ctgtttctaagtttgttgtaaatttggaatgcgttcctactattagaaaggaaagccttgtaattcttgatcatagtgatgagatcgacctcagtgagga |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45142203 |
ctgtttctaagtttgttgtaaatttggaatgcgttcctactattagaaaggaaagccttgtaattcttgatcatagtgatgagatcgacctcagtgagga |
45142302 |
T |
|
| Q |
206 |
tgtaggattcaaattgatccaaacatcgtgttttcatctttactttctgtaatcttttattttgtgtgtgtgtttcgacttcaattcaatttcaagaatt |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45142303 |
tgtaggattcaaattgatccaaacatcgtgttttcatctttactttctgtaatcttttattttgtgtgtgtgtttcgacttcaattcaatttcaagaatt |
45142402 |
T |
|
| Q |
306 |
tccttggatccaattttaatctattgtttcataacaatagattcaagtcttgatgaagcaatcaaagaagctatatggctgagaggtatcattcatgaac |
405 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45142403 |
tccttgcatccaattttaatctattatttcataacaatagattgaagtcttgatgaagcaatcaaagaagctatatggctgagaggtatcattcatgaac |
45142502 |
T |
|
| Q |
406 |
ttgagtacttgacaagttgctgattggtttgaacttgatcatttacaaagtagttacaaacttaaaagaaaaaagtgattaacaagtcactaaatccttg |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45142503 |
ttgagtacttgacaagttgctgattggtttgaacttgatcatttacaaagtagttacaaacttaaaagaaaaaagtgattaacaagtcactaaatccttg |
45142602 |
T |
|
| Q |
506 |
cactgaagaatcttcaaatatttgacagagtactattaaacaagttattaaatctctgttaattttatggtgataaattagaaaacaaatgtcctcaaaa |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45142603 |
cactgaagaatcttcaaatatttgacagagtactattaaacaagttattaaatctctgttaattttatggtgataaattagaaaacaaatgtcctcaaaa |
45142702 |
T |
|
| Q |
606 |
tcattccaatcagcctggagagataagtgatgcagaaacagattgagaatggtt |
659 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45142703 |
tcattccaatcagcctggagagataagtgatgcagaaacagattgagaatggtt |
45142756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 182 - 233
Target Start/End: Complemental strand, 34530995 - 34530943
Alignment:
| Q |
182 |
tgatgagatcgacctcagtgaggatgtaggattcaaa-ttgatccaaacatcg |
233 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||||||| |||| |
|
|
| T |
34530995 |
tgatgagatcgacctcaacgaggatgtaggattcaaagttgatccaaatatcg |
34530943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 206
Target Start/End: Complemental strand, 29361487 - 29361452
Alignment:
| Q |
171 |
cttgatcatagtgatgagatcgacctcagtgaggat |
206 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29361487 |
cttgatcatagtgatgggatcgacctcagtgaggat |
29361452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 206
Target Start/End: Original strand, 30270623 - 30270658
Alignment:
| Q |
171 |
cttgatcatagtgatgagatcgacctcagtgaggat |
206 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30270623 |
cttgatcatagtgatgggatcgacctcagtgaggat |
30270658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University