View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7551_low_17 (Length: 309)
Name: NF7551_low_17
Description: NF7551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7551_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 49602492 - 49602793
Alignment:
| Q |
1 |
tactaaactttaaatttctatacatgcatgacaactcaaactaagcatgcataacaagataaataacaacaaaatcaataaaaaacaaagaattgaattt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
49602492 |
tactaaactttaaatttctatacatgcatgacaactcaaactaagcatgcataacaagataaataacaacaaaatcaatgaaaaacaaagaattgaattt |
49602591 |
T |
|
| Q |
101 |
acctaaaagtgcatcaagagacctcaaatttgcaacaggattatcaccaaccaagacagaaaaagcagaaactttatcagcagcagtaccagacctctga |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49602592 |
acctaaaagtgcatcaagagacctcaaatttgcaacaggattatcaccaaccaagacagaaaaagcagaaactttatcagcagcagtaccagacctctga |
49602691 |
T |
|
| Q |
201 |
gtagaaatcaacatcttaatatcactactacgtcccctagttgattcataatcctgagaaaattgtgccatcaacctctcacccaattccctcttcttct |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49602692 |
gtagaaatcaacatcttaatatcactactacgtcccctagttgattcataatcctgagaaaattgtgccatcaacctctcacccaattccctcttcttct |
49602791 |
T |
|
| Q |
301 |
ca |
302 |
Q |
| |
|
|| |
|
|
| T |
49602792 |
ca |
49602793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 93 - 302
Target Start/End: Complemental strand, 7226611 - 7226402
Alignment:
| Q |
93 |
ttgaatttacctaaaagtgcatcaagagacctcaaatttgcaacaggattatcaccaaccaagacagaaaaagcagaaactttatcagcagcagtaccag |
192 |
Q |
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|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
7226611 |
ttgaatttacctaaaagagcatcaagagacctcaaatttgcaacaggattatcaccaaccaagacagaaaaggcagaaactttatcagcagcagtaccag |
7226512 |
T |
|
| Q |
193 |
acctctgagtagaaatcaacatcttaatatcactactacgtcccctagttgattcataatcctgagaaaattgtgccatcaacctctcacccaattccct |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||| |||| |
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| T |
7226511 |
acctctgagtagaaatcaacatcttaatatcactactacgtcccctagtcgattcataatcctgagcaaattgtgccatcaatctctcacccaataccct |
7226412 |
T |
|
| Q |
293 |
cttcttctca |
302 |
Q |
| |
|
|||||||||| |
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|
| T |
7226411 |
cttcttctca |
7226402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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