View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7551_low_19 (Length: 290)

Name: NF7551_low_19
Description: NF7551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7551_low_19
NF7551_low_19
[»] chr4 (4 HSPs)
chr4 (68-276)||(51035875-51036082)
chr4 (68-110)||(13759600-13759642)
chr4 (68-109)||(35579452-35579493)
chr4 (68-109)||(50380484-50380525)
[»] scaffold0164 (2 HSPs)
scaffold0164 (11-78)||(33916-33983)
scaffold0164 (68-109)||(33872-33913)
[»] scaffold0214 (2 HSPs)
scaffold0214 (60-110)||(25877-25927)
scaffold0214 (62-110)||(11577-11625)
[»] chr6 (3 HSPs)
chr6 (68-109)||(21686115-21686156)
chr6 (63-109)||(17097529-17097575)
chr6 (68-110)||(20014729-20014771)
[»] chr5 (4 HSPs)
chr5 (68-109)||(19832217-19832258)
chr5 (62-110)||(21116945-21116994)
chr5 (68-109)||(22542960-22543001)
chr5 (73-109)||(19832309-19832345)
[»] chr7 (4 HSPs)
chr7 (11-63)||(34231082-34231134)
chr7 (68-110)||(1725869-1725911)
chr7 (68-110)||(45623324-45623366)
chr7 (74-111)||(18564779-18564816)
[»] chr8 (3 HSPs)
chr8 (68-110)||(44970845-44970887)
chr8 (68-109)||(29642450-29642491)
chr8 (68-109)||(29781137-29781178)
[»] chr2 (2 HSPs)
chr2 (68-109)||(23463749-23463790)
chr2 (68-109)||(44923880-44923921)
[»] chr1 (1 HSPs)
chr1 (65-110)||(18509617-18509662)


Alignment Details
Target: chr4 (Bit Score: 143; Significance: 4e-75; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 68 - 276
Target Start/End: Complemental strand, 51036082 - 51035875
Alignment:
Q  68 tatacctattaataaaggcaatacctatttttggtgtagcctacnnnnnnn----ccaattttaaccctaaaacagaactatatttccacttgacaccct 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||           ||||||||| |||||||||||||||||||||||||||||||||||    
T  51036082 tatacctattaataaaggcaatacctatttttggtgtagcctaccttttttttttccaattttacccctaaaacagaactatatttccacttgacaccct 51035983  T
Q  164 tcacaataagcaactgcttggatagttacaataaaaatgaaactgctacctctcataattttgtgtatctggtgcacagaccaacacaaacaggggatga 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||| ||||| |||||||    
T  51035982 tcacaataagcaactgcttggatagttacaataaaaatgaaactgctacctctcataattttgtgtatctggt-----gaccaacaaaaacatgggatga 51035888  T
Q  264 gaaaggaagaaag 276  Q
    |||||||||||||    
T  51035887 gaaaggaagaaag 51035875  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 13759642 - 13759600
Alignment:
Q  68 tatacctattaataaaggcaatacctatttttggtgtagccta 110  Q
    |||||||||||||||||||||||| | | ||||||||||||||    
T  13759642 tatacctattaataaaggcaatacatctatttggtgtagccta 13759600  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 35579493 - 35579452
Alignment:
Q  68 tatacctattaataaaggcaatacctatttttggtgtagcct 109  Q
    ||||||||||||||||||||||||   |||||||||||||||    
T  35579493 tatacctattaataaaggcaatactattttttggtgtagcct 35579452  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 50380525 - 50380484
Alignment:
Q  68 tatacctattaataaaggcaatacctatttttggtgtagcct 109  Q
    |||||||||||||||||| ||||| | |||||||||||||||    
T  50380525 tatacctattaataaaggaaatacttttttttggtgtagcct 50380484  T

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Target: scaffold0164 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 33983 - 33916
Alignment:
Q  11 aatatgattaaaagatggcattaaaataataaaatagtttaagtatgttataatatttatacctatta 78  Q
    ||||||||||||||||| || |||||||||||||||||||||||| ||||||| || |||||||||||    
T  33983 aatatgattaaaagatgtcaataaaataataaaatagtttaagtaagttataaaatctatacctatta 33916  T

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Target: scaffold0164; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 33913 - 33872
Alignment:
Q  68 tatacctattaataaaggcaatacctatttttggtgtagcct 109  Q
    |||||||||||||||||||||||| |  ||||||||||||||    
T  33913 tatacctattaataaaggcaatacttgcttttggtgtagcct 33872  T

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Target: scaffold0214 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 25927 - 25877
Alignment:
Q  60 ataatatttatacctattaataaaggcaatacctatttttggtgtagccta 110  Q
    ||||||| |||||||||||||||||||||||| |  |||||||||||||||    
T  25927 ataatatctatacctattaataaaggcaatacttggttttggtgtagccta 25877  T

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Target: scaffold0214; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 11625 - 11577
Alignment:
Q  62 aatatttatacctattaataaaggcaatacctatttttggtgtagccta 110  Q
    ||||| |||||||||||||||||||||||| |  |||||||||||||||    
T  11625 aatatctatacctattaataaaggcaatacttggttttggtgtagccta 11577  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 21686156 - 21686115
Alignment:
Q  68 tatacctattaataaaggcaatacctatttttggtgtagcct 109  Q
    |||||||||||||||||||||||| | |||||||||||||||    
T  21686156 tatacctattaataaaggcaatacttttttttggtgtagcct 21686115  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 17097529 - 17097575
Alignment:
Q  63 atatttatacctattaataaaggcaatacctatttttggtgtagcct 109  Q
    |||| |||||||||||||||||||||||| | |||| ||||||||||    
T  17097529 atatctatacctattaataaaggcaatacatgttttcggtgtagcct 17097575  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 20014729 - 20014771
Alignment:
Q  68 tatacctattaataaaggcaatacctatttttggtgtagccta 110  Q
    |||||||||||||||||||||||| | | ||||||||||||||    
T  20014729 tatacctattaataaaggcaatacttttgtttggtgtagccta 20014771  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 19832217 - 19832258
Alignment:
Q  68 tatacctattaataaaggcaatacctatttttggtgtagcct 109  Q
    |||||||||||||||||||||||| | |||||||||||||||    
T  19832217 tatacctattaataaaggcaatacttttttttggtgtagcct 19832258  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 21116994 - 21116945
Alignment:
Q  62 aatatttatacctattaataaaggcaatacctat-ttttggtgtagccta 110  Q
    ||||| |||||||||||||||||||||||| | | |||||||||||||||    
T  21116994 aatatctatacctattaataaaggcaatacttttgttttggtgtagccta 21116945  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 22542960 - 22543001
Alignment:
Q  68 tatacctattaataaaggcaatacctatttttggtgtagcct 109  Q
    |||||||||||||||||||||||| | |||||| ||||||||    
T  22542960 tatacctattaataaaggcaatacttttttttgatgtagcct 22543001  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 109
Target Start/End: Original strand, 19832309 - 19832345
Alignment:
Q  73 ctattaataaaggcaatacctatttttggtgtagcct 109  Q
    ||||||||||||||||||| | |||||||||||||||    
T  19832309 ctattaataaaggcaatacttttttttggtgtagcct 19832345  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 34231082 - 34231134
Alignment:
Q  11 aatatgattaaaagatggcattaaaataataaaatagtttaagtatgttataa 63  Q
    |||| ||| |||| ||| ||||||||||||||||||||||||||| |||||||    
T  34231082 aataagatcaaaatatgtcattaaaataataaaatagtttaagtacgttataa 34231134  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 1725911 - 1725869
Alignment:
Q  68 tatacctattaataaaggcaatacctatttttggtgtagccta 110  Q
    |||||||||||||||||||||||| | | ||||||||||||||    
T  1725911 tatacctattaataaaggcaatacatctatttggtgtagccta 1725869  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 45623324 - 45623366
Alignment:
Q  68 tatacctattaataaaggcaatacctatttttggtgtagccta 110  Q
    |||||||||||||||||||||||| |  |||||||||||||||    
T  45623324 tatacctattaataaaggcaatactttcttttggtgtagccta 45623366  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 111
Target Start/End: Original strand, 18564779 - 18564816
Alignment:
Q  74 tattaataaaggcaatacctatttttggtgtagcctac 111  Q
    |||||||||||||||||| | |||||||||||||||||    
T  18564779 tattaataaaggcaatacttttttttggtgtagcctac 18564816  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 44970887 - 44970845
Alignment:
Q  68 tatacctattaataaaggcaatacctatttttggtgtagccta 110  Q
    |||||||||||||||||||||||| |  |||||||||||||||    
T  44970887 tatacctattaataaaggcaatacatgcttttggtgtagccta 44970845  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 29642491 - 29642450
Alignment:
Q  68 tatacctattaataaaggcaatacctatttttggtgtagcct 109  Q
    ||||||||||||||||| |||||| | |||||||||||||||    
T  29642491 tatacctattaataaagacaatacatgtttttggtgtagcct 29642450  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 29781137 - 29781178
Alignment:
Q  68 tatacctattaataaaggcaatacctatttttggtgtagcct 109  Q
    ||||||||||||||||||||||||   |||||||||||||||    
T  29781137 tatacctattaataaaggcaatactattttttggtgtagcct 29781178  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 23463790 - 23463749
Alignment:
Q  68 tatacctattaataaaggcaatacctatttttggtgtagcct 109  Q
    |||||||||||||||||||||||| |  ||||||||||||||    
T  23463790 tatacctattaataaaggcaatactttgttttggtgtagcct 23463749  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 44923921 - 44923880
Alignment:
Q  68 tatacctattaataaaggcaatacctatttttggtgtagcct 109  Q
    ||||||||||||||||||||||||   |||||||||||||||    
T  44923921 tatacctattaataaaggcaatactattttttggtgtagcct 44923880  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 18509662 - 18509617
Alignment:
Q  65 atttatacctattaataaaggcaatacctatttttggtgtagccta 110  Q
    |||||||||||||||||||||||| || ||  ||||||||||||||    
T  18509662 atttatacctattaataaaggcaaaacatagatttggtgtagccta 18509617  T

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