View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7551_low_20 (Length: 272)
Name: NF7551_low_20
Description: NF7551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7551_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 15 - 253
Target Start/End: Original strand, 33555790 - 33556028
Alignment:
| Q |
15 |
tattcctctcacaccattctgcagcagaaaatggctcattaaaagtatnnnnnnnnttttactaagcaaaattatagacagaattataaacatagaactt |
114 |
Q |
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| T |
33555790 |
tattcctctcacaccattctgcagcagaaaatggctcattaaaagtatagaaaaaattttactaagcaaaattatagacagaattataaacatagaactt |
33555889 |
T |
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| Q |
115 |
ttgacacctattagcaaaatgattgttcactgaattcaaatgtattagaaatttatttcattcccctttattttgattcctaaagtcttttaattttaat |
214 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33555890 |
ttgacacctattagtaaaatgattgttcactgaattcaaatgtattagaaatttatttcattcccctttattttgattcctaaagtcttttaattttaat |
33555989 |
T |
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| Q |
215 |
ctatagtttccatatacataaaacttttgacatacacgc |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
33555990 |
ctatagtttccatatacataaaacttttgacatacacgc |
33556028 |
T |
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