View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7551_low_29 (Length: 237)

Name: NF7551_low_29
Description: NF7551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7551_low_29
NF7551_low_29
[»] chr1 (12 HSPs)
chr1 (1-221)||(9364254-9364474)
chr1 (1-221)||(9337395-9337615)
chr1 (1-221)||(9242570-9242790)
chr1 (31-221)||(9299981-9300171)
chr1 (31-221)||(9257539-9257729)
chr1 (2-216)||(8939235-8939449)
chr1 (5-216)||(8926812-8927023)
chr1 (5-216)||(8962165-8962376)
chr1 (2-216)||(9466769-9466983)
chr1 (22-120)||(8861932-8862030)
chr1 (5-113)||(9070049-9070157)
chr1 (5-111)||(8979341-8979447)
[»] scaffold0690 (1 HSPs)
scaffold0690 (1-219)||(1463-1681)
[»] chr6 (1 HSPs)
chr6 (1-219)||(15910425-15910643)
[»] chr3 (1 HSPs)
chr3 (8-180)||(9171361-9171533)


Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 9364254 - 9364474
Alignment:
Q  1 agccgtgaagattcttaataatacagaggaagatgggaaggaattcataaatgaagtgggaaccatgggcaaaattcaccatctcaatgttgttcgtttg 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9364254 agccgtgaagattcttaataatacaaaggaagatgggaaggaattcataaatgaagtgggaaccatgggcaaaattcaccatctcaatgtcgttcgtttg 9364353  T
Q  101 cttcgcttctgcgaagatggtttttgtcgtgctttagtctataactttttcccaaatggttcgttttagaaattcatttctcccccgtacaaaaaagatg 200  Q
    ||| ||||||||| |||||||||| ||||||||||||||||| |||||||  |||||||||||||  ||||||||||||||||| || |||  |||||||    
T  9364354 cttggcttctgcgcagatggttttcgtcgtgctttagtctatgactttttttcaaatggttcgttgcagaaattcatttctcccgcgaacagcaaagatg 9364453  T
Q  201 atttccttggatgggataagt 221  Q
    |||||||||||||||||||||    
T  9364454 atttccttggatgggataagt 9364474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 9337395 - 9337615
Alignment:
Q  1 agccgtgaagattcttaataatacagaggaagatgggaaggaattcataaatgaagtgggaaccatgggcaaaattcaccatctcaatgttgttcgtttg 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9337395 agccgtgaagattcttaataatacataggaagatgggaaggaattcataaatgaagtgggaaccatgggcaaaattcaccatctcaatgtcgttcgtttg 9337494  T
Q  101 cttcgcttctgcgaagatggtttttgtcgtgctttagtctataactttttcccaaatggttcgttttagaaattcatttctcccccgtacaaaaaagatg 200  Q
    ||  ||||||||| |||||||||| ||||||||||||||||| |||||||  |||||||||||||  ||||||||||||||||| || |||  |||||||    
T  9337495 ctcggcttctgcgcagatggttttcgtcgtgctttagtctatgactttttttcaaatggttcgttgcagaaattcatttctcccgcgaacagcaaagatg 9337594  T
Q  201 atttccttggatgggataagt 221  Q
    |||||||||||||||||||||    
T  9337595 atttccttggatgggataagt 9337615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 9242790 - 9242570
Alignment:
Q  1 agccgtgaagattcttaataatacagaggaagatgggaaggaattcataaatgaagtgggaaccatgggcaaaattcaccatctcaatgttgttcgtttg 100  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||    
T  9242790 agccgtgaagattcttaataatgcagaggaagatgggaaggaattcataaatgaagtgggaaccatgggcaagattcatcatctaaatgtcgttcgtttg 9242691  T
Q  101 cttcgcttctgcgaagatggtttttgtcgtgctttagtctataactttttcccaaatggttcgttttagaaattcatttctcccccgtacaaaaaagatg 200  Q
    ||| ||| |||||  ||||| ||| | ||||||||||||||| ||||||||||||||||||||||  |||||||||||||| ||||  |||| |||||||    
T  9242690 cttggctactgcgcggatggatttcgccgtgctttagtctatgactttttcccaaatggttcgttgcagaaattcatttcttccccaaacaacaaagatg 9242591  T
Q  201 atttccttggatgggataagt 221  Q
    |||||||||||||||||||||    
T  9242590 atttccttggatgggataagt 9242570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 31 - 221
Target Start/End: Original strand, 9299981 - 9300171
Alignment:
Q  31 agatgggaaggaattcataaatgaagtgggaaccatgggcaaaattcaccatctcaatgttgttcgtttgcttcgcttctgcgaagatggtttttgtcgt 130  Q
    |||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| |||| || |  ||||| |||  ||||    
T  9299981 agatgggaaggagttcataaatgaagtgggaacaatgggcaaaatccaccatctcaatgttgtccgtttgcttggcttttgtgccgatggatttcatcgt 9300080  T
Q  131 gctttagtctataactttttcccaaatggttcgttttagaaattcatttctcccccgtacaaaaaagatgatttccttggatgggataagt 221  Q
    ||| |||||||| |||| ||||||| |||||||||  |||||||||||||||| ||   ||| ||||||  ||||||||||||||||||||    
T  9300081 gctctagtctatgacttcttcccaagtggttcgttgcagaaattcatttctcctcctagcaacaaagatagtttccttggatgggataagt 9300171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 31 - 221
Target Start/End: Complemental strand, 9257729 - 9257539
Alignment:
Q  31 agatgggaaggaattcataaatgaagtgggaaccatgggcaaaattcaccatctcaatgttgttcgtttgcttcgcttctgcgaagatggtttttgtcgt 130  Q
    |||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || |||||| |||| || |  ||||| |||  ||||    
T  9257729 agatgggaaggagttcataaatgaagtgggaactatgggtaaaatccaccatctcaatgctgtccgcttgcttggcttttgtgccgatggatttcatcgt 9257630  T
Q  131 gctttagtctataactttttcccaaatggttcgttttagaaattcatttctcccccgtacaaaaaagatgatttccttggatgggataagt 221  Q
    ||| |||||||| |||| |||||||||||||||||  |||||||||||||||| ||   |||  |||||  ||||||||||||||| ||||    
T  9257629 gctctagtctatgacttcttcccaaatggttcgttgcagaaattcatttctcctcctagcaacgaagatagtttccttggatgggacaagt 9257539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 2 - 216
Target Start/End: Original strand, 8939235 - 8939449
Alignment:
Q  2 gccgtgaagattcttaataatacagaggaagatgggaaggaattcataaatgaagtgggaaccatgggcaaaattcaccatctcaatgttgttcgtttgc 101  Q
    ||||||||||| |||| |||||| |||| ||||||||  || |||||||||||||||||||| ||||| |||||||| ||| | |||||||| || ||||    
T  8939235 gccgtgaagatgcttagtaataccgagggagatgggagagagttcataaatgaagtgggaactatgggaaaaattcatcatgttaatgttgtccggttgc 8939334  T
Q  102 ttcgcttctgcgaagatggtttttgtcgtgctttagtctataactttttcccaaatggttcgttttagaaattcatttctcccccgtacaaaaaagatga 201  Q
    || |||| || |  ||||| |||| ||||||||| || ||| ||||||||||||||||||| ||  | || ||||||||| | ||  |||| || ||||     
T  8939335 ttggcttttgtgccgatggattttatcgtgctttggtttatgactttttcccaaatggttcattgcaaaatttcatttcttcacctgacaacaaggatgt 8939434  T
Q  202 tttccttggatggga 216  Q
    ||||||||| |||||    
T  8939435 tttccttggttggga 8939449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 216
Target Start/End: Original strand, 8926812 - 8927023
Alignment:
Q  5 gtgaagattcttaataatacagaggaagatgggaaggaattcataaatgaagtgggaaccatgggcaaaattcaccatctcaatgttgttcgtttgcttc 104  Q
    |||||||| |||| ||||||||||| ||||||||  || ||||||||||| |||||||| ||||| ||||| || ||| | ||||||||||| ||||||     
T  8926812 gtgaagatgcttagtaatacagagggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttg 8926911  T
Q  105 gcttctgcgaagatggtttttgtcgtgctttagtctataactttttcccaaatggttcgttttagaaattcatttctcccccgtacaaaaaagatgattt 204  Q
    |||| || |  ||||| |||| ||||||| | || ||| |||||||||| |||||||||||  | || ||||||||| | ||  |||| || |||| |||    
T  8926912 gcttttgtgccgatggattttatcgtgctctggtttatgactttttcccgaatggttcgttgcaaaacttcatttcttcacccgacaacaaggatgtttt 8927011  T
Q  205 ccttggatggga 216  Q
    |||||| |||||    
T  8927012 ccttggttggga 8927023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 216
Target Start/End: Original strand, 8962165 - 8962376
Alignment:
Q  5 gtgaagattcttaataatacagaggaagatgggaaggaattcataaatgaagtgggaaccatgggcaaaattcaccatctcaatgttgttcgtttgcttc 104  Q
    |||||||| |||||||||||||| | ||||||||  || |||||||||||||| ||||| ||||| ||||| || ||| | |||||||| || || |||     
T  8962165 gtgaagatgcttaataatacagaaggagatgggagagagttcataaatgaagtaggaactatgggaaaaatccatcatgttaatgttgtccggttacttg 8962264  T
Q  105 gcttctgcgaagatggtttttgtcgtgctttagtctataactttttcccaaatggttcgttttagaaattcatttctcccccgtacaaaaaagatgattt 204  Q
    |||| ||||  ||||| |||| ||||||||| || ||| |||||||||| |||||||||||  | || ||||||||| | ||  |||| || |||| |||    
T  8962265 gcttttgcgctgatggattttatcgtgctttggtttatgactttttccctaatggttcgttgcaaaatttcatttcttcacctgacaacaaggatgtttt 8962364  T
Q  205 ccttggatggga 216  Q
    |||||| |||||    
T  8962365 ccttggttggga 8962376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 216
Target Start/End: Complemental strand, 9466983 - 9466769
Alignment:
Q  2 gccgtgaagattcttaataatacagaggaagatgggaaggaattcataaatgaagtgggaaccatgggcaaaattcaccatctcaatgttgttcgtttgc 101  Q
    ||||| ||||| || ||||| || |||| |||||| ||||| |||||||||||||||||||| ||||| ||||| || ||||| |||||||| |||||||    
T  9466983 gccgttaagatgctcaataacactgagggagatggtaaggagttcataaatgaagtgggaactatgggaaaaatccatcatcttaatgttgtccgtttgc 9466884  T
Q  102 ttcgcttctgcgaagatggtttttgtcgtgctttagtctataactttttcccaaatggttcgttttagaaattcatttctcccccgtacaaaaaagatga 201  Q
    || |||||||||  ||||| ||||  || | |||||||||  |  |||| |||| |||||| ||  |||||||  ||||||| ||  |||| |||||||     
T  9466883 ttggcttctgcgctgatggattttaccgcggtttagtctacgatctttttccaagtggttctttgcagaaatttctttctccaccaaacaacaaagatgc 9466784  T
Q  202 tttccttggatggga 216  Q
    ||| |||||||||||    
T  9466783 ttttcttggatggga 9466769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 120
Target Start/End: Complemental strand, 8862030 - 8861932
Alignment:
Q  22 tacagaggaagatgggaaggaattcataaatgaagtgggaaccatgggcaaaattcaccatctcaatgttgttcgtttgcttcgcttctgcgaagatgg 120  Q
    |||||||| ||| ||||| || ||||| |||||||||||||  ||||||||||| |||||  |||| || |||||||||||| ||||||||| ||||||    
T  8862030 tacagagggagaagggaaagagttcatcaatgaagtgggaattatgggcaaaatccaccacatcaacgtggttcgtttgcttggcttctgcgcagatgg 8861932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 113
Target Start/End: Complemental strand, 9070157 - 9070049
Alignment:
Q  5 gtgaagattcttaataatacagaggaagatgggaaggaattcataaatgaagtgggaaccatgggcaaaattcaccatctcaatgttgttcgtttgcttc 104  Q
    ||||||||||| || |||||| | | ||| ||||| || ||||| | |||||||| ||  |||||||||||||||||| ||||||| ||||||||||||     
T  9070157 gtgaagattctcaacaatacacaaggagaagggaaagagttcatcactgaagtggaaattatgggcaaaattcaccatatcaatgtggttcgtttgcttg 9070058  T
Q  105 gcttctgcg 113  Q
    |||| ||||    
T  9070057 gcttttgcg 9070049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 8979447 - 8979341
Alignment:
Q  5 gtgaagattcttaataatacagaggaagatgggaaggaattcataaatgaagtgggaaccatgggcaaaattcaccatctcaatgttgttcgtttgcttc 104  Q
    ||||||||||| || |||||||| | ||| ||||| || ||||| |  ||||||||||  ||||| ||||| |||||  ||||||||||||| ||||||     
T  8979447 gtgaagattctcaacaatacagaaggagacgggaaagagttcattagcgaagtgggaattatgggaaaaatccaccacatcaatgttgttcgattgcttg 8979348  T
Q  105 gcttctg 111  Q
    |||||||    
T  8979347 gcttctg 8979341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 1463 - 1681
Alignment:
Q  1 agccgtgaagattcttaataatacagaggaagatgggaaggaattcataaatgaagtgggaaccatgggcaaaattcaccatctcaatgttgttcgtttg 100  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  1463 agccgtgaagattcttaataatgcagagggagatgggaaggaattcataaatgaagtgggaaccatgggcaaaatccaccatctcaatgtcgttcgtttg 1562  T
Q  101 cttcgcttctgcgaagatggtttttgtcgtgctttagtctataactttttcccaaatggttcgttttagaaattcatttctcccccgtacaaaaaagatg 200  Q
    ||| |||| |||| |||||||||| ||||||||||||| ||| ||||||| ||||||||||||||  |||||||||| |||| || | |||| |||||||    
T  1563 cttggcttttgcgcagatggttttcgtcgtgctttagtttatgacttttttccaaatggttcgttacagaaattcatatctcacctgaacaacaaagatg 1662  T
Q  201 atttccttggatgggataa 219  Q
    |||||||||||||||||||    
T  1663 atttccttggatgggataa 1681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 15910643 - 15910425
Alignment:
Q  1 agccgtgaagattcttaataatacagaggaagatgggaaggaattcataaatgaagtgggaaccatgggcaaaattcaccatctcaatgttgttcgtttg 100  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  15910643 agccgtgaagattcttaataatgcagagggagatgggaaggaattcataaatgaagtgggaaccatgggcaaaatccaccatctcaatgtcgttcgtttg 15910544  T
Q  101 cttcgcttctgcgaagatggtttttgtcgtgctttagtctataactttttcccaaatggttcgttttagaaattcatttctcccccgtacaaaaaagatg 200  Q
    ||  |||| |||  ||||||||||  |||||||||||| ||| ||||||| ||||||||||||||  | |||||||| |||| |||| |||| |||||||    
T  15910543 ctcggcttttgctcagatggttttcatcgtgctttagtttatgacttttttccaaatggttcgttacaaaaattcatatctcacccgaacaacaaagatg 15910444  T
Q  201 atttccttggatgggataa 219  Q
    |||||||||||||||||||    
T  15910443 atttccttggatgggataa 15910425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 180
Target Start/End: Original strand, 9171361 - 9171533
Alignment:
Q  8 aagattcttaataatacagaggaagatgggaaggaattcataaatgaagtgggaaccatgggcaaaattcaccatctcaatgttgttcgtttgcttcgct 107  Q
    ||||| || ||||| ||||||| |||||||||||| |||||||||||||||||||| ||||||||||| |||||||| |||||||| ||||||||| |||    
T  9171361 aagatgctaaataacacagagggagatgggaaggagttcataaatgaagtgggaactatgggcaaaatccaccatctaaatgttgtccgtttgcttggct 9171460  T
Q  108 tctgcgaagatggtttttgtcgtgctttagtctataactttttcccaaatggttcgttttagaaattcatttc 180  Q
    | ||||  ||||| |||  ||||||| |||||||| | ||||||||||||||||| ||  |||||||||||||    
T  9171461 tttgcgccgatggatttcatcgtgctctagtctatgattttttcccaaatggttctttgcagaaattcatttc 9171533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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