View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7551_low_30 (Length: 222)
Name: NF7551_low_30
Description: NF7551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7551_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 37306816 - 37307021
Alignment:
| Q |
1 |
aaaatcaaaggctgtttcagttttatagtacgtttcactctcacattccactgttttcttctttgaattatgtattacttagttaataatcatcgctttt |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37306816 |
aaaatcaaaggctgtttcagtttcatagtacgtttcactctcacattccactgttttcttctttgtattatgtattacttagttaataatcatcgctttt |
37306915 |
T |
|
| Q |
101 |
gataggcgttgcgttcttcgttagtttttcatgccgaagtacgtgtcaacgaaagcgtatatcaatttcaacacagactttttccttaattatttgttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
37306916 |
gataggcgttgcgttcttcgttagtttttcatgccgaagtacgtgtcaacgaaagcgtatatcaatttcaacacagactttttccttagttatttgttaa |
37307015 |
T |
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| Q |
201 |
ttaaag |
206 |
Q |
| |
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|||||| |
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| T |
37307016 |
ttaaag |
37307021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 114 - 199
Target Start/End: Complemental strand, 7842124 - 7842039
Alignment:
| Q |
114 |
ttcttcgttagtttttcatgccgaagtacgtgtcaacgaaagcgtatatcaatttcaacacagactttttccttaattatttgtta |
199 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||| |
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| T |
7842124 |
ttctttgttagtttctcatgccgaagtacgtgtcaacgaaagcgtaattcaatttcaacacagacttgtttcttaattatttgtta |
7842039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 16663814 - 16663774
Alignment:
| Q |
8 |
aaggctgtttcagttttatagtacgtttcactctcacattc |
48 |
Q |
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|||| |||||||| || |||||||||||||||||||||||| |
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| T |
16663814 |
aaggttgtttcagattcatagtacgtttcactctcacattc |
16663774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 17638174 - 17638134
Alignment:
| Q |
8 |
aaggctgtttcagttttatagtacgtttcactctcacattc |
48 |
Q |
| |
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|||| |||||||| || |||||||||||||||||||||||| |
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| T |
17638174 |
aaggttgtttcagattcatagtacgtttcactctcacattc |
17638134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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