View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7551_low_5 (Length: 536)
Name: NF7551_low_5
Description: NF7551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7551_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 481; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 21 - 525
Target Start/End: Complemental strand, 39491758 - 39491254
Alignment:
| Q |
21 |
aaccaattcactggtaaacttattgaagtttcttgcaccacccttggatcgttcttaacaaccaattcactgataaacttattgaagttcttgctagaac |
120 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39491758 |
aaccaattccctggtaaacttattgaagtttcttgcaccacccttggatcgttcttaacaaccaattcactgataaacttattgaagttcttgctagaac |
39491659 |
T |
|
| Q |
121 |
taccaccttcctgtaaagtttttcttgccaactctttaatttccgtaaccctcttcttaatctcaccagcatttggaccttccaaaacctccttaataca |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||| ||||||||||||||| ||||||| |
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| T |
39491658 |
taccaccttcctgtaaagtttttcttgccaactctttaatttctgtagccctcttcttaatctcaccagcatgtggcccttccaaaacctccctaataca |
39491559 |
T |
|
| Q |
221 |
cctctcaatctcttctacacttgcaaccccatcttccccatatttcacttttacaccattcctaaacacattctgaataagcatagcatttgttggttgg |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39491558 |
cctctcaatctcttctacacttgcaaccccatcttccccatatttcacttttacaccattcctaaacacattctgaataagcatagcatttgttggttgg |
39491459 |
T |
|
| Q |
321 |
tcagtccaagatggccaaccaataacaggcacaccagttatcaatgtctcaagtgttgagttccaaccacaatgacttagaaaacaagcaacagcagggt |
420 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39491458 |
tcagtccaagatggccaaccaataacaggcacaccagttatcaatgtctcaagtgttgagttccaaccacaatgacttagaaaacaagcaacagcagggt |
39491359 |
T |
|
| Q |
421 |
gcattaacaccttctcctgtgcacaccatttcacaaccaaacctctcccttcagtctctttcaaaaactcttttggtaattcataagcagcatcctttgt |
520 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39491358 |
gcattaacaccttctcctgtgcacaccatttcacaaccaaacctctcccttcagtctctttcaaaaactcttttggtaattcataagcagcatcctttgt |
39491259 |
T |
|
| Q |
521 |
ttcat |
525 |
Q |
| |
|
||||| |
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|
| T |
39491258 |
ttcat |
39491254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 61 - 525
Target Start/End: Original strand, 39287317 - 39287781
Alignment:
| Q |
61 |
cccttggatcgttcttaacaaccaattcactgataaacttattgaagttcttgctagaactaccaccttcctgtaaagtttttcttgccaactctttaat |
160 |
Q |
| |
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|||||| || ||| ||||||| ||||||||| ||||| | |||||| || || |||||||||||| |||||| |||| ||||||||| | |||||||| |
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| T |
39287317 |
cccttgaattgtttttaacaatcaattcacttataaattgattgaaattattactagaactaccatcttcctccaaagcttttcttgcagaatctttaat |
39287416 |
T |
|
| Q |
161 |
ttccgtaaccctcttcttaatctcaccagcatttggaccttccaaaacctccttaatacacctctcaatctcttctacacttgcaaccccatcttcccca |
260 |
Q |
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|||| || |||| |||||||||||||||||||| || ||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
39287417 |
ttccatagcccttttcttaatctcaccagcattaggcccttccataacctccctaatacacctctcaatctcttttacacttgcaaccccatcttcccca |
39287516 |
T |
|
| Q |
261 |
tatttcacttttacaccattcctaaacacattctgaataagcatagcatttgttggttggtcagtccaagatggccaaccaataacaggcacaccagtta |
360 |
Q |
| |
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|| |||||||| || ||||||||||||||||||| ||||||||| |||||||||||||| ||| |||||| ||||| | |||||||||||||||||||| |
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| T |
39287517 |
taattcactttcaccccattcctaaacacattctcaataagcattgcatttgttggttgatcaagccaagaaggccagcaaataacaggcacaccagtta |
39287616 |
T |
|
| Q |
361 |
tcaatgtctcaagtgttgagttccaaccacaatgacttagaaaacaagcaacagcagggtgcattaacaccttctcctgtgcacaccatttcacaaccaa |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39287617 |
tcaatgtctcaagtgttgagttccaaccacaatgacttagaaaacaagcaacagcagggtgcattaacaccttctcctgtgcacaccatttcacaaccaa |
39287716 |
T |
|
| Q |
461 |
acctctcccttcagtctctttcaaaaactcttttggtaattcataagcagcatcctttgtttcat |
525 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39287717 |
acctctcccttcagtctctttcaaaaactcttttggtaattcataagcagcatcctttgtttcat |
39287781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 39491790 - 39491729
Alignment:
| Q |
48 |
gtttcttgcaccacccttggatcgttcttaacaaccaattcactgataaacttattgaagtt |
109 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||| |
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| T |
39491790 |
gtttcctgcaccacccttggatcgttcttaaaaaccaattccctggtaaacttattgaagtt |
39491729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 39491702 - 39491670
Alignment:
| Q |
18 |
aacaaccaattcactggtaaacttattgaagtt |
50 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |
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|
| T |
39491702 |
aacaaccaattcactgataaacttattgaagtt |
39491670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 502
Target Start/End: Original strand, 5905995 - 5906115
Alignment:
| Q |
382 |
tccaaccacaatgacttagaaaacaagcaacagcagggtgcattaacaccttctcctgtgcacaccatttcacaaccaaacctctcccttcagtctcttt |
481 |
Q |
| |
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|||||||||||||| | ||||||||| || |||||||| |||| |||||||| || ||||||| | |||||||||||||| |||| || |||| |
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| T |
5905995 |
tccaaccacaatgagacaaaaaacaagccactgcagggtggcttaaaaccttctcttgattacaccatgttacaaccaaacctcttccttttgtttcttc |
5906094 |
T |
|
| Q |
482 |
caaaaactcttttggtaattc |
502 |
Q |
| |
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||||||| ||||||| ||||| |
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|
| T |
5906095 |
caaaaacccttttggaaattc |
5906115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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