View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7551_low_6 (Length: 444)
Name: NF7551_low_6
Description: NF7551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7551_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 19 - 429
Target Start/End: Complemental strand, 2620454 - 2620045
Alignment:
| Q |
19 |
aaagctctcccagaaaatattggctttgctattagagttttggaaacaaggaactactttctgtttagatttaacatatgcaacgaatgaactgaaattg |
118 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2620454 |
aaagctctcacagaaaatattagctttgctattagagttttggaaacaaggaactactttctgtttagatttaacatatgcaatgaatgaactgaaattg |
2620355 |
T |
|
| Q |
119 |
tacactgagctacataatgcatatttctaaataatcctacaaattctttattcagaacaatcaatcacattgaacactgataaagaaacggttcgtttgg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
2620354 |
tacactgagctacataatgcatatttctaaataatcctacaaattctttattcagaacaatcaatcacattgaacactcataaagaaacggtttgtttgg |
2620255 |
T |
|
| Q |
219 |
gagagtggccatcaacctccaagtcgaagaaggcatgtcaattcaccgtgatataaaaaagctgcaataaatagcttctaactcaacatgcgttcaccat |
318 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2620254 |
gagagtggccatcaacct-caagtcgaagaagccatgtcaattcaccgtgatataaaaaagctgcaataaatagcttctaactcaacatgcgttcaccat |
2620156 |
T |
|
| Q |
319 |
tcccccaacgccaaaacaaacacataaaatcagctggttacatatggttatgcttgcattatcaccaacaaaatttgtcaagttccaagacacggacctg |
418 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2620155 |
tccccaaacgccaaaacaaacacataaaatcagctggttacatatggttatgcttgcattatcaccaacaaaatttggcaagttccaagacacggacctg |
2620056 |
T |
|
| Q |
419 |
ttgcatttcat |
429 |
Q |
| |
|
||||||||||| |
|
|
| T |
2620055 |
ttgcatttcat |
2620045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University