View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7551_low_7 (Length: 437)
Name: NF7551_low_7
Description: NF7551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7551_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 3810428 - 3810854
Alignment:
| Q |
1 |
aagaatcaatgaagtcaattgatgatcttattcatgcagttcagaaagcatttgatgaatattcatgtgtacaatccgataaaattttttatactctaca |
100 |
Q |
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| T |
3810428 |
aagaatcaatgaagtcaattgatgatcttattcatgcagttcagaaagcattcgatgaatattcatgtgtacaatccgataaaaaaatttatactctaca |
3810527 |
T |
|
| Q |
101 |
aacatgcatggttgaaataatgaagaataagggatcaaacaggtacaaaactcctcacaagaagaaagatatgctatataaccaagatgggatacctact |
200 |
Q |
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| T |
3810528 |
aacatgcatggttgaaataatgaagaataagggatcaaacaggtacaaaactcctcacaagaagaaagatatgctatataaccaagatgggatacctact |
3810627 |
T |
|
| Q |
201 |
caattaagttgtgattctgagctgattcaagaagtcacagattatcttcaaagttttaatgcatcattagcatgattacaatgagaatgcaatgcaagtg |
300 |
Q |
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|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3810628 |
caattaagttgtgattctgaactgattcaagaagtcacatattatcttcaaagttttaatgcatcattagcatgattacaatgagaatgcaatgcaagtg |
3810727 |
T |
|
| Q |
301 |
ttttgtgcttgctttgttcacc--nnnnnnnncctagtttcgaactttatagagctagtttgtcatttttaagggattttgttgttcttaggatttaatc |
398 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3810728 |
ttttgtgcttgctttgttcaccttttttttttcctagtttcgaactttatagagctagtttgtcatttttaagggattttgttgttcttaggatttaatc |
3810827 |
T |
|
| Q |
399 |
cttgctactttcattattaatgatatt |
425 |
Q |
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| T |
3810828 |
cttgctactttcattattaatgatatt |
3810854 |
T |
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