View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7551_low_8 (Length: 435)
Name: NF7551_low_8
Description: NF7551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7551_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 61 - 418
Target Start/End: Complemental strand, 49602420 - 49602059
Alignment:
| Q |
61 |
tacttaattatttgctcaagacgttgtattgttttgct----gagacttacgtaatgtattacatacactatatgccttgaaattgatattcgtggaaat |
156 |
Q |
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| T |
49602420 |
tacttaattatttgctcaagacgttgtattgttctgctaagagagacttacgtaatgtattacatacactatatgccttgaaattgatattcgtcgaaat |
49602321 |
T |
|
| Q |
157 |
gattgattcttttgacggcttctattggctttattttttgttctctaaattgagatttctcttttctaagtttttagccatttcattgtcttatctttgt |
256 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
49602320 |
gattgattcttttgacggcttctattggctttattttttgttctctaaattgagatttctcctttctaagtttttagccatttcattgtcttatctttgt |
49602221 |
T |
|
| Q |
257 |
acatattctgacctgtaaaatctgtttcccctttattttgaatctgtactagctcttcgatttgaatgtgacatatcattaccagatttctatgttctat |
356 |
Q |
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| T |
49602220 |
acatattctgacttgtaaaatctgtttcccctttattttgaatctgcactagctcttcgatttgaatgtgacatatcattaccagatttctatgttctat |
49602121 |
T |
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| Q |
357 |
ctaatgttctgaaagaaaaattgttttcttttcctagcagcacacccctgcatatattactt |
418 |
Q |
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| T |
49602120 |
ctaatgttctgaaagaaaaattgttttcttttcctagcagcacacccctgcatatattactt |
49602059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 49602448 - 49602416
Alignment:
| Q |
10 |
agaacctgtggatatatcaagttttgattactt |
42 |
Q |
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| T |
49602448 |
agaacatgtggatatatcaagttttgattactt |
49602416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 271 - 401
Target Start/End: Original strand, 8554321 - 8554451
Alignment:
| Q |
271 |
gtaaaatctgtttcccctttattttgaatctgtactagctcttcgatttgaatgtgacatatcattaccagatttctatgttctatctaatgttctgaaa |
370 |
Q |
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||||||| |||||||||||||||||||||||| | |||| ||| ||| | |||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
8554321 |
gtaaaatttgtttcccctttattttgaatctgcagtagcactttgatgttaatgtgacatatcattaccagatttctatgttctatttaatgttatgaaa |
8554420 |
T |
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| Q |
371 |
gaaaaattgttttcttttcctagcagcacac |
401 |
Q |
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| T |
8554421 |
gaaaaattgttttcttttcctagcagcacac |
8554451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 342
Target Start/End: Original strand, 34991248 - 34991297
Alignment:
| Q |
293 |
tttgaatctgtactagctcttcgatttgaatgtgacatatcattaccaga |
342 |
Q |
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||||||| |||| |||| ||| ||||||||||| |||||||||||||||| |
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| T |
34991248 |
tttgaatttgtagtagccctttgatttgaatgttacatatcattaccaga |
34991297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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