View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7551_low_9 (Length: 432)
Name: NF7551_low_9
Description: NF7551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7551_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 19 - 414
Target Start/End: Original strand, 188422 - 188824
Alignment:
| Q |
19 |
aaaaacgcaatcattgttgtgaaatattagtcaaatcgtcatcttgcttaatttcaagttcgctaacacagtctttaatttccaaatagtttctttttat |
118 |
Q |
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| T |
188422 |
aaaaacgcaatcattgttgtgaaatattagtcaaatcgtcatcttgcttaatttcaagttcgctaacacagtctttaatttccaaatagtttctttttat |
188521 |
T |
|
| Q |
119 |
cgctccctgataatacgagtaaatcattattcgagggatgtaatattgtcaatgatattcaattctatcatttcaaatttctaagtagacaaattcagta |
218 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
188522 |
cgctccctgataatatgagtaaatcattattcgagggatgtaatgttgtcaatgatattcaattctatcatttcaaatttctaagtggacaaattcagta |
188621 |
T |
|
| Q |
219 |
gcaagttttagtattcattagaactttcaataatataaggcaaatagttgagatttttct--tgtgtgttaaggtgcgtgggtgactttacaccaaattt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
188622 |
gcaagttttagtattcattagaactttcaataatataaggcaaatagttgagatttttcttgtgtgtgttaaggtgcgtgggtgactttacaccaaattt |
188721 |
T |
|
| Q |
317 |
ataaccagcatatcatacnnnnnnngacagaaccaacatatcatac-----ttataactgcacaaataaggtattaccctgacttaagagagatacatat |
411 |
Q |
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|||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
188722 |
ataaccagcatatcatactttttttgaccgaaccaacatatcatacttatattataactgcacaaataaggtattaccctgacttaagagagatacatat |
188821 |
T |
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| Q |
412 |
gat |
414 |
Q |
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||| |
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| T |
188822 |
gat |
188824 |
T |
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