View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7552_high_1 (Length: 499)
Name: NF7552_high_1
Description: NF7552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7552_high_1 |
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| [»] chr6 (7 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 455; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 17 - 499
Target Start/End: Original strand, 4368002 - 4368484
Alignment:
| Q |
17 |
aagataaacatttatacaaaacagaaccaggatgcaggggaaaaaagaaacaatgatttaaatatgtaaatgtactagacagattaagctgtttataata |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4368002 |
aagataaacatttatacaaaacagaaccaggatgcaggggaaaaaagaaacaatgatttaaatatgtaaatgtactaaacagattaagctgtttataata |
4368101 |
T |
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| Q |
117 |
caatgaatgcttaaaacttcatccaagtaaatgaaagaaaatagatttcagtaaatccaatagggtttataaaatataaatcagaccaaaacaaatctcg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4368102 |
caatgaatgcttaaaacttcatccaagtaaatgaaagaaaatagatttcagtaaatccaatagggtttataaaacataaatcagaccaaaacaaatctcg |
4368201 |
T |
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| Q |
217 |
aatattaacgtaccaacgccatctatcccagctagttttggcatgaacaactgcctgatgtggttgtcagctgcattctcagctgtcagtgtctcacacc |
316 |
Q |
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| T |
4368202 |
aatattaacataccaacaccatctatcccagctagttttggcatgaacaactgcctgatgtggttgtcagctgcattctcagctgtcagtgtctcacacc |
4368301 |
T |
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| Q |
317 |
tgaatgaatccatgattcttttcttcgcatgttttttgttcaacaataccagtgatcaatttatcccgactattccaaggtgagtgcaaataagaaaatg |
416 |
Q |
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|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4368302 |
tgaatgaatccatgattcttttctacgaatgttttttgttcaacaataccagtgatcaacttatcccgactattccaaggtgagtgcaaataagaaaatg |
4368401 |
T |
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| Q |
417 |
aacatgtcatcaaaatgaagattagaccaggatagcaaaatcctacaaaattcacaataaccatatatacatgcatatcaatt |
499 |
Q |
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| T |
4368402 |
aacatgtcatcaaaatgaagattagaccaggatagcaaaatcctacaaaattcacaataaccatatatacatgcatatcaatt |
4368484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 31 - 439
Target Start/End: Original strand, 4363586 - 4363988
Alignment:
| Q |
31 |
tacaaaacagaaccaggatgcaggggaaaaaag-aaacaatgatttaaatatgtaaatgtactagacagattaagctgtttataatacaatgaatgctta |
129 |
Q |
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|||| |||||||||||||||||| |||||||| |||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||| || |
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| T |
4363586 |
tacataacagaaccaggatgcagtggaaaaaaacaaacaatgatttaaatatataaatgtagtaaacagattaagctgtttataatacaatgaatgcata |
4363685 |
T |
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| Q |
130 |
aaacttcatccaagtaaatgaaagaaaatagatttcagtaaatccaatagggtttataaaatataaa------tcagaccaaaacaaatctcgaatatta |
223 |
Q |
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| T |
4363686 |
aaacttcatccaagtaaattaaagaa--tacatttcagtaaatccaatagggtttataaaaaataaacataaatcagaccaaaacaaatctcgaatatta |
4363783 |
T |
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| Q |
224 |
acgtaccaacgccatctatcccagctagttttggcatgaacaactgcctgatgtggttgtcagctgcattctcagctgtcagtgtctcacacctgaatga |
323 |
Q |
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| T |
4363784 |
acata---------tctatcccagctagttttggcaagaacaactgcctgatgtggtcatcagctgcattctcagctttcagtgtctcacacttggatga |
4363874 |
T |
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| Q |
324 |
atccatgattcttttcttcgcatgttttttgttcaacaataccagtgatcaatttatcccgactattccaaggtgagtgcaaataagaaaatgaacatgt |
423 |
Q |
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| || || ||||||||||| |||| |||||||||||| ||||| |||||||| |||||||||||| || ||||||| ||||||||| ||||||||||||| |
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| T |
4363875 |
aaccgtggttcttttcttcccatg-tttttgttcaaccatacctgtgatcaacttatcccgactactcaaaggtga-tgcaaataataaaatgaacatgt |
4363972 |
T |
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| Q |
424 |
catcaaaatgaagatt |
439 |
Q |
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|| |||||||||||| |
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| T |
4363973 |
gattaaaatgaagatt |
4363988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 193 - 409
Target Start/End: Original strand, 4358392 - 4358600
Alignment:
| Q |
193 |
taaatcagaccaaaacaaatctcgaatattaacgtaccaacgccatctatcccagctagttttggcatgaacaactgcctgatgtggttgtcagctgcat |
292 |
Q |
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| T |
4358392 |
taaatcagactgaaacaaatcttgaatattgacataccaacaccatccatcccagctagttttggctagaacaactgcctgatgtggtcgtcagctgcat |
4358491 |
T |
|
| Q |
293 |
tctcagctgtcagtgtctcacacctgaatgaatccatgattcttttcttcgcatgttttttgttcaacaataccagtgatcaatttatcccgactattcc |
392 |
Q |
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| T |
4358492 |
tctcagct-tgagtgtct------tgaatgaaaccgtgattcttttcgtcccatg-tttttgttcaaccatacctgtgatcaacttatcccgactattca |
4358583 |
T |
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| Q |
393 |
aaggtgagtgcaaataa |
409 |
Q |
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| T |
4358584 |
aaggtgaatgcaaataa |
4358600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 393 - 499
Target Start/End: Original strand, 4358618 - 4358724
Alignment:
| Q |
393 |
aaggtgagtgcaaataagaaaatgaacatgtcatcaaaatgaagattagaccaggatagcaaaatcctacaaaattcacaataaccatatatacatgcat |
492 |
Q |
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||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4358618 |
aaggtgaatgcaaataataaaatgaacatgtcatcaaaatgaagattataccaggatagcaaaatcctataaaattcacaataaccatatatacatgcat |
4358717 |
T |
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| Q |
493 |
atcaatt |
499 |
Q |
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||||||| |
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| T |
4358718 |
atcaatt |
4358724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 31 - 126
Target Start/End: Original strand, 4358274 - 4358369
Alignment:
| Q |
31 |
tacaaaacagaaccaggatgcaggggaaaaaagaaacaatgatttaaatatgtaaatgtactagacagattaagctgtttataatacaatgaatgc |
126 |
Q |
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| T |
4358274 |
tacaaaacatgactaggatgcaggcgaaaaaagaaacattgatttaaatatataaatgtactaaccagattaagctgtttataatacaatgaatgc |
4358369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 217 - 406
Target Start/End: Complemental strand, 4417925 - 4417740
Alignment:
| Q |
217 |
aatattaacgtaccaacgccatctatcccagctagttttggcatgaacaactgcctgatgtggttgtcagctgcattctcagctgtcagtgtctcacacc |
316 |
Q |
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|||||| || ||||||| |||| |||||||||||||||||||||||| | ||||||||||| |||||||||| ||||||| |||||||||||||| |
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| T |
4417925 |
aatattgacataccaacagcatccatcccagctagttttggcatgaac---ttcctgatgtggtcttcagctgcatcctcagctttcagtgtctcacact |
4417829 |
T |
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| Q |
317 |
tgaatgaatccatgattcttttcttcgcatgttttttgttcaacaataccagtgatcaatttatcccgactattccaaggtgagtgcaaa |
406 |
Q |
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| T |
4417828 |
caaatgaaactgtgattcttttcttcccat-ccttttgttcaaccatacctgtgatctccttatcccaactgttaaaaggtgaatgcaaa |
4417740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 499
Target Start/End: Original strand, 4364049 - 4364095
Alignment:
| Q |
453 |
aaaatcctacaaaattcacaataaccatatatacatgcatatcaatt |
499 |
Q |
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| T |
4364049 |
aaaatcctacaaaattcataataaccatatatgtatgcatatcaatt |
4364095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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