View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7552_low_2 (Length: 449)
Name: NF7552_low_2
Description: NF7552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7552_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 218
Target Start/End: Original strand, 29847283 - 29847490
Alignment:
| Q |
11 |
atggacatcaaagacaaagagaagaagctctttctttggtcatcaagaaactatgctgcagaacacaaacttttcctcacaactcttctacttctctgca |
110 |
Q |
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| T |
29847283 |
atggccatcaaagacaaagagaagaagctctttctttggtcatcaagaaactatgctgcagaacacaaacttttcctcacaactcttctacttctctgca |
29847382 |
T |
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| Q |
111 |
ccattgccactctcttttgcttcataccttcttctttcactatctcagcttctgatctcagactttgcatctcaagaatctctcaaactccaccgacacc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
29847383 |
ccattgccactctcttttgcttcataccttcttctttcactatctcagcttctgatctcagactttgtatctcaagaatctctcaaactccaccgacacc |
29847482 |
T |
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| Q |
211 |
gacggcga |
218 |
Q |
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|||||||| |
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| T |
29847483 |
gacggcga |
29847490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 250 - 433
Target Start/End: Original strand, 29847519 - 29847702
Alignment:
| Q |
250 |
ctcttccattgtccatgaaaaactcattaccaataccaacaccaccactatcatcaagcgtttcttcaacccttatggctcagcagcatacaacttcatc |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29847519 |
ctcttccattgtccatgaaaaactcattaccaataccaacaccaccactatcatcaagcgtttcttcaacccttatggctcagcagcatacaacttcatc |
29847618 |
T |
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| Q |
350 |
acaatgagtgcttatagaggtggactcaacacttttgctatcactggtctttcttcaaagcctcttcatgtttatggaaatcct |
433 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29847619 |
acaatgagtgcttatagaggtggacttaacacttttgctatcactggtctttcttcaaagcctcttcatgtttatggaaatcct |
29847702 |
T |
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