View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7552_low_3 (Length: 426)

Name: NF7552_low_3
Description: NF7552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7552_low_3
NF7552_low_3
[»] chr8 (10 HSPs)
chr8 (1-395)||(13025001-13025397)
chr8 (63-304)||(18096229-18096470)
chr8 (145-315)||(18081792-18081962)
chr8 (63-120)||(12712113-12712170)
chr8 (71-120)||(6117562-6117611)
chr8 (63-124)||(18139784-18139845)
chr8 (65-121)||(12724620-12724676)
chr8 (71-118)||(12705461-12705508)
chr8 (260-315)||(18139876-18139931)
chr8 (264-309)||(26606662-26606707)
[»] chr1 (2 HSPs)
chr1 (50-122)||(17747850-17747923)
chr1 (56-123)||(22535498-22535565)


Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 13025001 - 13025397
Alignment:
Q  1 accaatggcaaaatccattcatgttcacgagagaatgtgggcaagaagcaggcatatcaaccccatcgagtttcctccaagaattacttttgaggctata 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13025001 accaatggcaaaatccattcatgttcacgagagaacgtgggcaagaagcaggcatatcaaccccatcgagtttcctccaagaattacttttgaggctata 13025100  T
Q  101 aatctccgagaaagggtcatacaagttgaatatgagcnnnnnnncctcccaaaaactgtcattcaaatccagctcgtgcacatctctctcccaaaaagga 200  Q
    |||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13025101 aatctccgagaaagggtcatacaagttgaatatgagctttttttcctcccaaaaactgtcattcaaatccagctcgtgcacatctctctcccaaaaagga 13025200  T
Q  201 tcatccttgtccggcaaataaacccaatcaccacttcgaaattctaagggataataaaccttccgaatcaccttaaaatcatcactaacagagtcataac 300  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  13025201 tcatccttgtccggaaaataaacccaatcaccacttcgaaattctaagggataataaaccttccaaatcaccttaaaatcatcactaacagagtcataac 13025300  T
Q  301 caaatccataaggagtatagttgaagtgaatgttttcgtgcggttgatagctaggaggaacgaccttaaat--agcggtagcagggttccacaatac 395  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||    
T  13025301 caaatccataaggagtatagttgaagtgaatgttttcgtgtggttgatagctaggaggaacgaccttaaattcagcggtagcagggtttcacaatac 13025397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 63 - 304
Target Start/End: Complemental strand, 18096470 - 18096229
Alignment:
Q  63 ccatcgagtttcctccaagaattacttttgaggctataaatctccgagaaagggtcatacaagttgaatatgagcnnnnnnncctcccaaaaactgtcat 162  Q
    ||||| |||||||||||||||| ||  ||||||||||| |||||| | || || |||||||| ||||  ||||||       |||||||||||| |||||    
T  18096470 ccatcaagtttcctccaagaatcacgcttgaggctatacatctcccaaaatggttcatacaacttgacaatgagccccttctcctcccaaaaaccgtcat 18096371  T
Q  163 tcaaatccagctcgtgcacatctctctcccaaaaaggatcatccttgtccggcaaataaacccaatcaccacttcgaaattctaagggataataaacctt 262  Q
    |||  || || | ||| |||||  ||||||||||||| |||||||||| ||| ||| ||||||||||| ||| |  |||||||||||||||   ||||||    
T  18096370 tcatgtcaaggttgtgtacatcagtctcccaaaaagggtcatccttgttcggtaaacaaacccaatcatcaccttcaaattctaagggatatctaacctt 18096271  T
Q  263 ccgaatcaccttaaaatcatcactaacagagtcataaccaaa 304  Q
    |||||||||||||||||||||   |||| |||||||||||||    
T  18096270 ccgaatcaccttaaaatcatctgaaacacagtcataaccaaa 18096229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 145 - 315
Target Start/End: Complemental strand, 18081962 - 18081792
Alignment:
Q  145 cctcccaaaaactgtcattcaaatccagctcgtgcacatctctctcccaaaaaggatcatccttgtccggcaaataaacccaatcaccacttcgaaattc 244  Q
    |||||||||||  |||| |||| || || | ||| |||||  ||||||||||||| |||||||||||||||||| ||||||||||| ||| |  ||||||    
T  18081962 cctcccaaaaatcgtcaatcaagtcaaggtggtgtacatcaatctcccaaaaagggtcatccttgtccggcaaacaaacccaatcatcaccttcaaattc 18081863  T
Q  245 taagggataataaaccttccgaatcaccttaaaatcatcactaacagagtcataaccaaatccataaggag 315  Q
     ||||||||   |||||| |||||||||||| |||||||  ||||| | ||||||||||| |||| |||||    
T  18081862 aaagggatacctaaccttacgaatcaccttataatcatctgtaacacaatcataaccaaacccatgaggag 18081792  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 12712113 - 12712170
Alignment:
Q  63 ccatcgagtttcctccaagaattacttttgaggctataaatctccgagaaagggtcat 120  Q
    ||||||| |||||||||||| ||||||||||||||||| |||||| ||||||||||||    
T  12712113 ccatcgattttcctccaagagttacttttgaggctatatatctcccagaaagggtcat 12712170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 6117611 - 6117562
Alignment:
Q  71 tttcctccaagaattacttttgaggctataaatctccgagaaagggtcat 120  Q
    |||||||||||| ||||||||||||||||| |||||| ||||||||||||    
T  6117611 tttcctccaagagttacttttgaggctatatatctcccagaaagggtcat 6117562  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 124
Target Start/End: Original strand, 18139784 - 18139845
Alignment:
Q  63 ccatcgagtttcctccaagaattacttttgaggctataaatctccgagaaagggtcatacaa 124  Q
    ||||| |||||||||||||||| ||||||||| ||||| |||||| | ||||| ||||||||    
T  18139784 ccatcaagtttcctccaagaatcacttttgagactatatatctcccaaaaaggttcatacaa 18139845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 121
Target Start/End: Complemental strand, 12724676 - 12724620
Alignment:
Q  65 atcgagtttcctccaagaattacttttgaggctataaatctccgagaaagggtcata 121  Q
    |||||||||||||||||| |||||| |||||||||| |||||| |||| || |||||    
T  12724676 atcgagtttcctccaagagttacttctgaggctatatatctccaagaatggttcata 12724620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 12705508 - 12705461
Alignment:
Q  71 tttcctccaagaattacttttgaggctataaatctccgagaaagggtc 118  Q
    |||||||||||| ||||||||||||||||| | |||| ||||||||||    
T  12705508 tttcctccaagagttacttttgaggctatataactcccagaaagggtc 12705461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 315
Target Start/End: Original strand, 18139876 - 18139931
Alignment:
Q  260 cttccgaatcaccttaaaatcatcactaacagagtcataaccaaatccataaggag 315  Q
    |||||||||||||||||||||||   ||||| ||||||||||||| |||| |||||    
T  18139876 cttccgaatcaccttaaaatcattcgtaacacagtcataaccaaacccatgaggag 18139931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 309
Target Start/End: Complemental strand, 26606707 - 26606662
Alignment:
Q  264 cgaatcaccttaaaatcatcactaacagagtcataaccaaatccat 309  Q
    |||||||||||  ||||||| |||||||| ||||||||||||||||    
T  26606707 cgaatcaccttgtaatcatctctaacagaatcataaccaaatccat 26606662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 122
Target Start/End: Complemental strand, 17747923 - 17747850
Alignment:
Q  50 aggcatatcaaccccatcga-gtttcctccaagaattacttttgaggctataaatctccgagaaagggtcatac 122  Q
    ||||||||||||||||| || ||||||||||||| |||||| |||||||||| |||||  ||||||||||||||    
T  17747923 aggcatatcaaccccattgaagtttcctccaagagttacttatgaggctatatatctcacagaaagggtcatac 17747850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 123
Target Start/End: Original strand, 22535498 - 22535565
Alignment:
Q  56 atcaaccccatcgagtttcctccaagaattacttttgaggctataaatctccgagaaagggtcataca 123  Q
    |||||| ||||| |||||||||||||| |||||| | ||||| || |||||| | |||||||||||||    
T  22535498 atcaacaccatcaagtttcctccaagagttacttctaaggctgtatatctcccaaaaagggtcataca 22535565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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