View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7552_low_9 (Length: 256)

Name: NF7552_low_9
Description: NF7552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7552_low_9
NF7552_low_9
[»] chr8 (10 HSPs)
chr8 (1-241)||(13024743-13024983)
chr8 (94-215)||(18096646-18096767)
chr8 (153-218)||(12647160-12647225)
chr8 (153-212)||(12711786-12711845)
chr8 (149-218)||(12652270-12652339)
chr8 (161-221)||(12709892-12709952)
chr8 (155-218)||(6117901-6117964)
chr8 (145-215)||(18082280-18082350)
chr8 (155-212)||(12705780-12705837)
chr8 (163-212)||(22945459-22945508)
[»] chr4 (2 HSPs)
chr4 (94-215)||(37875592-37875713)
chr4 (170-218)||(20426643-20426691)
[»] chr2 (2 HSPs)
chr2 (151-218)||(44912518-44912585)
chr2 (164-218)||(44937794-44937848)
[»] chr1 (4 HSPs)
chr1 (164-222)||(19219179-19219237)
chr1 (164-222)||(19225436-19225494)
chr1 (171-212)||(22535211-22535252)
chr1 (103-223)||(17748092-17748211)
[»] chr3 (1 HSPs)
chr3 (164-221)||(2703738-2703795)
[»] chr7 (1 HSPs)
chr7 (150-222)||(6432600-6432672)
[»] chr5 (1 HSPs)
chr5 (151-227)||(42840501-42840577)


Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 13024983 - 13024743
Alignment:
Q  1 gttatggtgtcgtttgactttagcaaagagacattcgttgcaacaccattaccctctaactcagatataaaatataaacggatgaaaatgggattggtgg 100  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13024983 gttatggtgttgtttgactttaccaaagagacattcgttgcaacaccattaccctctaactcagatataaaatataaacagatgaaaatgggattggtgg 13024884  T
Q  101 aattaaatggatctctttcttacatcactaattacaaccagacacctgattttcacatttgggttttgggtgaactcggtgtcaaggaatcgtggactaa 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13024883 aattagatggatctctttcttacatcactaattacaaccagacgcctgattttcacatttgggttttgggtgaactcggtgtcaaagaatcgtggactaa 13024784  T
Q  201 attctttgttgtcggacccttaacttgtcctcttatctctg 241  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  13024783 attctttgttgttggacccttaacttgtcctcttatctctg 13024743  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 215
Target Start/End: Original strand, 18096646 - 18096767
Alignment:
Q  94 ttggtggaattaaatggatctctttcttacatcactaattacaaccagacacctgattttcacatttgggttttgggtgaactcggtgtcaaggaatcgt 193  Q
    |||||||| |||||||  |||||||||  ||||  ||||||| ||  ||| ||||||||||| |||||||||||||||||| | |||||||||||||| |    
T  18096646 ttggtggagttaaatgagtctctttctgtcatctataattacgacaggacgcctgattttcatatttgggttttgggtgaagtgggtgtcaaggaatcat 18096745  T
Q  194 ggactaaattctttgttgtcgg 215  Q
    |||| ||  |||||||||||||    
T  18096746 ggaccaagctctttgttgtcgg 18096767  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 12647160 - 12647225
Alignment:
Q  153 tcacatttgggttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgtcggacc 218  Q
    |||||| ||||||||||||||||  ||||| |||||||||||||||||| | |||||||| |||||    
T  12647160 tcacatatgggttttgggtgaacatggtgttaaggaatcgtggactaaactttttgttgttggacc 12647225  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 12711845 - 12711786
Alignment:
Q  153 tcacatttgggttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgt 212  Q
    |||||| ||| ||||||||||||||||||| || |||||||||| |||| ||||||||||    
T  12711845 tcacatatggattttgggtgaactcggtgttaaagaatcgtggattaaactctttgttgt 12711786  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 218
Target Start/End: Original strand, 12652270 - 12652339
Alignment:
Q  149 attttcacatttgggttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgtcggacc 218  Q
    |||||||||| | | ||||||||||| | |||||  ||||||||||||||||| |||||||||| |||||    
T  12652270 attttcacatatcgattttgggtgaaattggtgttgaggaatcgtggactaaactctttgttgttggacc 12652339  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 12709952 - 12709892
Alignment:
Q  161 gggttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgtcggaccctt 221  Q
    ||||||||||| || |  |||||||||||||||||||||||||||| ||| | ||||||||    
T  12709952 gggttttgggttaaattagtgtcaaggaatcgtggactaaattcttcgttcttggaccctt 12709892  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 6117901 - 6117964
Alignment:
Q  155 acatttgggttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgtcggacc 218  Q
    |||| ||| ||||||||||||| ||||| || |||||||||| |||| |||||||||| |||||    
T  6117901 acatatggattttgggtgaacttggtgttaaagaatcgtggattaaactctttgttgttggacc 6117964  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 18082280 - 18082350
Alignment:
Q  145 cctgattttcacatttgggttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgtcgg 215  Q
    ||||||||||| ||||||||||||| |||| | ||||| |||||||| ||||| ||  ||||| |||||||    
T  18082280 cctgattttcatatttgggttttggatgaagtgggtgtaaaggaatcatggaccaagctctttattgtcgg 18082350  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 212
Target Start/End: Original strand, 12705780 - 12705837
Alignment:
Q  155 acatttgggttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgt 212  Q
    |||| ||| ||||||||||| ||||||| || |||||||||| |||| ||||||||||    
T  12705780 acatatggattttgggtgaagtcggtgttaaagaatcgtggattaaactctttgttgt 12705837  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 22945459 - 22945508
Alignment:
Q  163 gttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgt 212  Q
    ||||| |||||||||||| | | |||||||||||||||||| ||||||||    
T  22945459 gttttaggtgaactcggtttgatggaatcgtggactaaattgtttgttgt 22945508  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 215
Target Start/End: Original strand, 37875592 - 37875713
Alignment:
Q  94 ttggtggaattaaatggatctctttcttacatcactaattacaaccagacacctgattttcacatttgggttttgggtgaactcggtgtcaaggaatcgt 193  Q
    |||||||| |||||||  |||||||||  ||||  ||||||| ||  ||| ||||||||||| || ||||||||||||||| | ||| | |||||||| |    
T  37875592 ttggtggagttaaatgagtctctttctgtcatctataattacgacatgacgcctgattttcatatctgggttttgggtgaagtgggtattaaggaatcat 37875691  T
Q  194 ggactaaattctttgttgtcgg 215  Q
    |||| ||  |||||||||||||    
T  37875692 ggaccaatctctttgttgtcgg 37875713  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 20426643 - 20426691
Alignment:
Q  170 gtgaactcggtgtcaaggaatcgtggactaaattctttgttgtcggacc 218  Q
    |||||||||| || |||||||||||||| ||| |||||||||| |||||    
T  20426643 gtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggacc 20426691  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 44912585 - 44912518
Alignment:
Q  151 tttcacatttgggttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgtcggacc 218  Q
    |||||||| | | ||||||||||||| ||||| ||||||||||| |||||| |||||||||| |||||    
T  44912585 tttcacatatcgattttgggtgaacttggtgtgaaggaatcgtgaactaaactctttgttgttggacc 44912518  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 44937848 - 44937794
Alignment:
Q  164 ttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgtcggacc 218  Q
    |||||||||||||||| || || ||||| ||||||||| |||||||||| |||||    
T  44937848 ttttgggtgaactcggcgtgaaagaatcatggactaaactctttgttgttggacc 44937794  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 19219237 - 19219179
Alignment:
Q  164 ttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgtcggaccctta 222  Q
    |||||||||||||||||||||||||||| ||||||||  |||| | ||| |||||||||    
T  19219237 ttttgggtgaactcggtgtcaaggaatcatggactaagctcttcgatgttggaccctta 19219179  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 19225494 - 19225436
Alignment:
Q  164 ttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgtcggaccctta 222  Q
    |||||||||| ||||||||||||||||| ||||||||  |||| | ||| |||||||||    
T  19225494 ttttgggtgagctcggtgtcaaggaatcatggactaagctcttcgatgttggaccctta 19225436  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 22535252 - 22535211
Alignment:
Q  171 tgaactcggtgtcaaggaatcgtggactaaattctttgttgt 212  Q
    ||||||||||||| ||||||||||| ||||| ||||||||||    
T  22535252 tgaactcggtgtcgaggaatcgtgggctaaactctttgttgt 22535211  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 223
Target Start/End: Original strand, 17748092 - 17748211
Alignment:
Q  103 ttaaatggatctctttcttacatcactaattacaaccagacacctgattttcacatttgggttttgggtgaactcggtgtcaaggaatcgtggactaaat 202  Q
    |||||||| ||| |||||  |||| |||||||  || ||||| || |||||||||| | | ||| |||| ||||| ||||||||||||| |||||||||     
T  17748092 ttaaatgggtctgtttctctcatctctaattattacaagacaacttattttcacatatagattt-gggtcaactctgtgtcaaggaatcatggactaaag 17748190  T
Q  203 tctttgttgtcggacccttaa 223  Q
    | || ||||| ||||| ||||    
T  17748191 ttttcgttgttggaccattaa 17748211  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 2703738 - 2703795
Alignment:
Q  164 ttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgtcggaccctt 221  Q
    ||||||||||||| |||||||||||||| |||| |||| |||||| ||| | ||||||    
T  2703738 ttttgggtgaacttggtgtcaaggaatcatggattaaactctttgatgttgaaccctt 2703795  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 6432600 - 6432672
Alignment:
Q  150 ttttcacatttgggttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgtcggaccctta 222  Q
    ||||||||| |  |||||| ||||||| |||||||| ||||| ||||| ||| ||||  ||||||||||||||    
T  6432600 ttttcacatatatgttttgtgtgaacttggtgtcaaagaatcatggaccaaactcttcattgtcggaccctta 6432672  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 42840577 - 42840501
Alignment:
Q  151 tttcacatttgggttttgggtgaactcggtgtcaaggaatcgtggactaaattctttgttgtcggacccttaacttg 227  Q
    ||||||||||   ||||||||||||| ||||| || ||||| ||||||||| ||||| |||| || |||||| ||||    
T  42840577 tttcacatttcaattttgggtgaacttggtgtaaaagaatcatggactaaagtctttattgttggtcccttaccttg 42840501  T

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