View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7554_high_1 (Length: 204)
Name: NF7554_high_1
Description: NF7554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7554_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 39919970 - 39919799
Alignment:
| Q |
17 |
atactattcctgatactaaataattaaacgtcatgttttgctttttatagctggagaaaagaatgcagcttttagaatctattcaatatttaattttgat |
116 |
Q |
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| T |
39919970 |
atactattcctgatactaaataattaaacgtcatgttttgctttttatagctggagaaaagaatgcagcttttagaatctattcaatatttaattttgat |
39919871 |
T |
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| Q |
117 |
tgtttcttgaattcatttctccttatgaacctttataaattgaaattaacatggaaagtgacaagtaatttt |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39919870 |
tgtttcttgaattcatttctccttatgaacctttataaattgaaattaacatggaaagtgacaagtaatttt |
39919799 |
T |
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