View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7554_low_2 (Length: 203)
Name: NF7554_low_2
Description: NF7554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7554_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 22427035 - 22426867
Alignment:
| Q |
18 |
gttacaacaacgaaaaacctccaaagatctccaacaatggagtctaaaaagaagatttcaattgccaaaatctgtcagctcgaacatcaaaagaatttcc |
117 |
Q |
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| T |
22427035 |
gttacaacaacgaaaaacctccaaagatctccaacaatggagtctaaaaagaagatttcaattgacaaaatccgtcagctcgaacatcaaaagaatttcc |
22426936 |
T |
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| Q |
118 |
aaataactaatctaacttatatggatcagtttagtctcagatggaaatggataaacaactatgtagaataat |
189 |
Q |
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| T |
22426935 |
aaataactaatctaacttatatgg---agtttagtctcagatggaaattgataaacaactatgtagaataat |
22426867 |
T |
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Target: chr2 (Bit Score: 122; Significance: 9e-63; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 41616479 - 41616643
Alignment:
| Q |
18 |
gttacaacaacgaaaaacctccaaagatctccaacaatggagtctaaaaagaagatttcaattgccaaaatctgtcagctcgaacatcaaaagaatttcc |
117 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
41616479 |
gttacaatagcgaaaaacctccaaagatctccaacaatggagtctaaaaagaagatgtcaattgacaaaatccgtcagctcgaacatcaaaagaatttcc |
41616578 |
T |
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| Q |
118 |
aaataactaatctaacttatatggatcagtttagtctcagatggaaatggataaacaactatgtagaa |
185 |
Q |
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| T |
41616579 |
aaataactgatccaacttatatgg---agtttagtctcagatggaaatagataaacaactatgtagaa |
41616643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 30 - 185
Target Start/End: Original strand, 2620321 - 2620473
Alignment:
| Q |
30 |
aaaaacctccaaagatctccaacaatggagtctaaaaagaagatttcaattgccaaaatctgtcagctcgaacatcaaaagaatttccaaataactaatc |
129 |
Q |
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| T |
2620321 |
aaaaacctccaaagatctccaacaatggagtctaaaaagaagatgtcaattgacaaaatccgtcaggtcgaacatcaaaagaatttccaaataactgatc |
2620420 |
T |
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| Q |
130 |
taacttatatggatcagtttagtctcagatggaaatggataaacaactatgtagaa |
185 |
Q |
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| T |
2620421 |
aaacttatatgg---agtttagtctcagatggaaatggataaacaactatgtagaa |
2620473 |
T |
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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 4716795 - 4716880
Alignment:
| Q |
18 |
gttacaacaacgaaaaacctccaaagatctccaacaatggagtctaaaaagaagatttcaattgccaaaatctgtcagctcgaaca |
103 |
Q |
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| T |
4716795 |
gttacaacagcgaaaaatctacatagatctccaacaatggaatctagaaagaagatgtcaattgacaaaattcgtcagctcgaaca |
4716880 |
T |
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