View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7555_high_2 (Length: 494)

Name: NF7555_high_2
Description: NF7555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7555_high_2
NF7555_high_2
[»] chr1 (20 HSPs)
chr1 (18-484)||(40403028-40403497)
chr1 (365-484)||(48419570-48419689)
chr1 (365-484)||(43575629-43575748)
chr1 (365-484)||(25298020-25298140)
chr1 (365-484)||(115864-115983)
chr1 (365-465)||(48419956-48420056)
chr1 (365-467)||(11344906-11345007)
chr1 (365-450)||(31528602-31528687)
chr1 (376-484)||(52043356-52043465)
chr1 (433-484)||(8096276-8096327)
chr1 (365-484)||(773158-773278)
chr1 (436-484)||(41187734-41187781)
chr1 (433-484)||(1531247-1531297)
chr1 (433-484)||(16143440-16143490)
chr1 (433-484)||(34748855-34748905)
chr1 (421-484)||(46880084-46880146)
chr1 (377-451)||(13315237-13315311)
chr1 (420-489)||(11409005-11409075)
chr1 (420-484)||(11978246-11978310)
chr1 (420-479)||(44648213-44648273)
[»] chr3 (27 HSPs)
chr3 (217-327)||(6981490-6981599)
chr3 (366-484)||(30102527-30102644)
chr3 (365-476)||(21824417-21824527)
chr3 (365-484)||(42896791-42896909)
chr3 (365-482)||(3418759-3418874)
chr3 (420-484)||(22526405-22526469)
chr3 (365-465)||(7777537-7777637)
chr3 (365-484)||(39822590-39822709)
chr3 (367-484)||(50098979-50099095)
chr3 (365-484)||(4577809-4577928)
chr3 (369-484)||(25842311-25842425)
chr3 (365-476)||(40360291-40360401)
chr3 (19-64)||(6981372-6981417)
chr3 (420-484)||(14265818-14265881)
chr3 (367-451)||(22102389-22102473)
chr3 (367-451)||(22177337-22177421)
chr3 (420-484)||(32560154-32560220)
chr3 (365-484)||(45644088-45644207)
chr3 (365-400)||(52957664-52957699)
chr3 (367-412)||(533621-533666)
chr3 (420-484)||(8149528-8149590)
chr3 (365-484)||(24487988-24488107)
chr3 (420-484)||(41923355-41923420)
chr3 (365-482)||(49429661-49429776)
chr3 (420-484)||(1149345-1149407)
chr3 (436-484)||(27947780-27947827)
chr3 (420-484)||(42401551-42401615)
[»] chr2 (18 HSPs)
chr2 (365-484)||(28146036-28146154)
chr2 (365-484)||(41122638-41122755)
chr2 (365-484)||(30976985-30977103)
chr2 (365-484)||(35125928-35126047)
chr2 (420-484)||(36080250-36080313)
chr2 (433-484)||(3357673-3357724)
chr2 (381-484)||(41384488-41384588)
chr2 (433-484)||(42949766-42949817)
chr2 (365-451)||(7603683-7603769)
chr2 (365-474)||(42185747-42185857)
chr2 (376-484)||(12069422-12069527)
chr2 (433-484)||(33312996-33313046)
chr2 (420-484)||(12069661-12069722)
chr2 (420-469)||(13594261-13594310)
chr2 (420-469)||(18072398-18072447)
chr2 (365-401)||(1397035-1397071)
chr2 (420-484)||(38692577-38692640)
chr2 (420-480)||(42060418-42060477)
[»] chr7 (11 HSPs)
chr7 (365-484)||(2475045-2475163)
chr7 (365-484)||(19371692-19371811)
chr7 (365-484)||(23050834-23050950)
chr7 (365-484)||(39151758-39151874)
chr7 (365-484)||(48624768-48624888)
chr7 (365-480)||(39434903-39435015)
chr7 (365-484)||(21093604-21093717)
chr7 (365-475)||(48110267-48110377)
chr7 (365-484)||(7525779-7525899)
chr7 (433-484)||(10199649-10199699)
chr7 (420-484)||(38598532-38598594)
[»] chr8 (13 HSPs)
chr8 (365-484)||(34966667-34966785)
chr8 (365-484)||(15919533-15919652)
chr8 (365-484)||(27837518-27837635)
chr8 (365-447)||(29684202-29684284)
chr8 (432-484)||(15044269-15044322)
chr8 (365-469)||(3739546-3739650)
chr8 (365-411)||(4437893-4437939)
chr8 (361-395)||(12471116-12471150)
chr8 (420-484)||(18279352-18279413)
chr8 (365-484)||(41942470-41942586)
chr8 (447-484)||(14436649-14436686)
chr8 (365-398)||(18443076-18443109)
chr8 (365-401)||(38283630-38283666)
[»] chr5 (16 HSPs)
chr5 (420-484)||(36700806-36700870)
chr5 (365-484)||(38696985-38697102)
chr5 (365-476)||(19650678-19650786)
chr5 (365-451)||(28003212-28003298)
chr5 (420-484)||(5776501-5776565)
chr5 (365-484)||(19128578-19128701)
chr5 (420-482)||(7938112-7938173)
chr5 (365-475)||(28766267-28766378)
chr5 (365-484)||(38445529-38445647)
chr5 (365-484)||(10542976-10543097)
chr5 (365-451)||(832150-832236)
chr5 (420-484)||(25781980-25782045)
chr5 (420-484)||(39850858-39850923)
chr5 (420-484)||(7649037-7649100)
chr5 (420-484)||(15988270-15988333)
chr5 (366-451)||(36226436-36226521)
[»] chr4 (18 HSPs)
chr4 (365-476)||(20702323-20702434)
chr4 (365-484)||(35447140-35447258)
chr4 (365-484)||(27376317-27376433)
chr4 (365-411)||(47045203-47045249)
chr4 (368-484)||(4958890-4959006)
chr4 (424-484)||(13781502-13781561)
chr4 (367-484)||(26878604-26878720)
chr4 (432-484)||(31138884-31138935)
chr4 (365-484)||(49574849-49574965)
chr4 (433-476)||(36927010-36927053)
chr4 (366-412)||(36963020-36963066)
chr4 (365-451)||(47931360-47931446)
chr4 (364-400)||(1580090-1580126)
chr4 (367-484)||(6196613-6196733)
chr4 (376-484)||(34659216-34659325)
chr4 (420-484)||(37830959-37831022)
chr4 (367-411)||(44182310-44182354)
chr4 (369-450)||(46196732-46196813)
[»] scaffold0445 (1 HSPs)
scaffold0445 (365-484)||(4798-4915)
[»] chr6 (11 HSPs)
chr6 (365-484)||(22535451-22535567)
chr6 (420-484)||(12169872-12169938)
chr6 (365-484)||(22535047-22535166)
chr6 (365-476)||(31861812-31861922)
chr6 (365-484)||(28711975-28712089)
chr6 (365-484)||(17353074-17353188)
chr6 (365-411)||(12184840-12184886)
chr6 (420-474)||(20715856-20715910)
chr6 (365-451)||(14965202-14965288)
chr6 (436-484)||(2441461-2441508)
chr6 (380-469)||(34210064-34210153)
[»] scaffold0196 (1 HSPs)
scaffold0196 (365-400)||(8263-8298)
[»] scaffold0068 (1 HSPs)
scaffold0068 (365-400)||(57675-57710)
[»] scaffold0081 (1 HSPs)
scaffold0081 (365-451)||(12538-12624)
[»] scaffold0137 (1 HSPs)
scaffold0137 (424-484)||(6912-6971)
[»] scaffold0013 (1 HSPs)
scaffold0013 (364-400)||(41616-41652)


Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 484
Target Start/End: Original strand, 40403028 - 40403497
Alignment:
Q  18 cttctaatcctcttgttcagtaaccttcccttgaaagttccagcattctcaattctgtttctacaagagtttctttagccaatttattcagtatttaaca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40403028 cttctaatcctcttgttcagtaaccttcccttgaaagttccagcattctcaattctgtttctacaagagtttctttagccaatttattcagtatttaaca 40403127  T
Q  118 aaacatttctggttatacaacatgcaatatatggcacatagtagtcattatccccaaaca-------------aaggaattcatggtttagtttgaatca 204  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||    
T  40403128 aaacatttttggttatacaacatgcaatatatggcacatagtagtcattatccccaaacagttgttcactataaaggaattcatggtttagtttgaatca 40403227  T
Q  205 gttaagacagataaattaattgattcaaagattaaacaacacccaaatcactgttggaggttctctaatctaacattcatttcatttagatggaggagaa 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  40403228 gttaagacagataaattaattgattcaaagattaaacaacacccaaatcactgttggaggttctctaatctaacattcctttcatttagatggaggagaa 40403327  T
Q  305 ggcagttataacatatcattcaattttactttcaataaaaaatgtacgactaaaacatgttatatttatatttactttttcattatcccaaatatatatt 404  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||| ||||||          || |||||||||||||||||||||| |||||||||||    
T  40403328 ggcagttataacagatcattcaattttactttctataaaaaatgtatgactaa----------atatatatttactttttcattatcctaaatatatatt 40403417  T
Q  405 taaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagattatatattttttgttatatt 484  Q
    ||||||||       |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40403418 taaacaactttttctataataaagatcgttgttggtatcattaaaaacaagattttagattatatattttttgctatatt 40403497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 365 - 484
Target Start/End: Complemental strand, 48419689 - 48419570
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagat 464  Q
    |||||||||| |||||||||||||||||||| ||||   | || ||||       |||||||||||| ||||||||||||||||||| |||| |||||||    
T  48419689 tatatttatacttactttttcattatcccaattatagcatcaaccaactttttctataataaagatcgttgttggtatcattaaaaaaaagaatttagat 48419590  T
Q  465 tatatattttttgttatatt 484  Q
    |||||||||||| |||||||    
T  48419589 tatatattttttattatatt 48419570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 365 - 484
Target Start/End: Complemental strand, 43575748 - 43575629
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagat 464  Q
    |||||||||| |||||||||||||||||||| ||||   ||||||||        ||||||||||||||||||||| ||||||||||   || |||||||    
T  43575748 tatatttatacttactttttcattatcccaattatacccttaaacaaatttttctataataaagatcattgttggtgtcattaaaaaagtgaatttagat 43575649  T
Q  465 tatatattttttgttatatt 484  Q
    ||||| |||||| |||||||    
T  43575648 tatattttttttattatatt 43575629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 365 - 484
Target Start/End: Original strand, 25298020 - 25298140
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcatt--aaaaacaagattttag 462  Q
    ||||||||||||||||||||||||||| ||| ||||  |||||||||        |||||||||||| |||||||| |||||  ||||| |||| |||||    
T  25298020 tatatttatatttactttttcattatctcaattatacctttaaacaaatttttctataataaagatcgttgttggtgtcattaaaaaaaaaagaatttag 25298119  T
Q  463 attatatattttttgttatatt 484  Q
    ||||||| ||||||||||||||    
T  25298120 attatat-ttttttgttatatt 25298140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 365 - 484
Target Start/End: Complemental strand, 115983 - 115864
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaa-caagattttaga 463  Q
    |||||||||| |||||||||||||||| ||| |||||  |||||||||       |||||||||||  |||||||| ||||||||||  |||| ||||||    
T  115983 tatatttatacttactttttcattatctcaattatatcattaaacaactttttatataataaagattgttgttggtgtcattaaaaataaagaatttaga 115884  T
Q  464 ttatatattttttgttatatt 484  Q
    |||||| ||||||||||||||    
T  115883 ttatat-ttttttgttatatt 115864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 365 - 465
Target Start/End: Original strand, 48419956 - 48420056
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagat 464  Q
    |||||||||| |||||||||||||||||||| ||||   |||||||||       |||||||||||| |||||||| |||||||||  |||| |||||||    
T  48419956 tatatttatacttactttttcattatcccaattataccattaaacaactttttctataataaagatcgttgttggtgtcattaaaagaaagaatttagat 48420055  T
Q  465 t 465  Q
    |    
T  48420056 t 48420056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 365 - 467
Target Start/End: Original strand, 11344906 - 11345007
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagat 464  Q
    |||||||||| |||||||||||||||||||| ||||   |||||||||       |||||||||||  |||||||| |||||||||| |||| |||||||    
T  11344906 tatatttatacttactttttcattatcccaattatactcttaaacaactttttctataataaagattgttgttggtgtcattaaaaa-aagaatttagat 11345004  T
Q  465 tat 467  Q
    |||    
T  11345005 tat 11345007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 450
Target Start/End: Original strand, 31528602 - 31528687
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaa 450  Q
    |||||||||| |||||||||||||||| ||| |||| |||||||||||       |||||||||||  |||||||| |||||||||    
T  31528602 tatatttatacttactttttcattatctcaattatacatttaaacaactttttctataataaagattgttgttggtgtcattaaaa 31528687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 484
Target Start/End: Original strand, 52043356 - 52043465
Alignment:
Q  376 ttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagattatata-tttt 474  Q
    |||||||||||||||| ||| ||||  ||||||||||       |||||||||||  |||||||| |||||||||| || |  |||||||||||| ||||    
T  52043356 ttactttttcattatctcaattatacctttaaacaactttttctataataaagatttttgttggtgtcattaaaaaaaaaaaattagattatatattttt 52043455  T
Q  475 ttgttatatt 484  Q
    ||||||||||    
T  52043456 ttgttatatt 52043465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 433 - 484
Target Start/End: Original strand, 8096276 - 8096327
Alignment:
Q  433 ttgttggtatcattaaaaacaagattttagattatatattttttgttatatt 484  Q
    |||||||| |||||||||| |||| |||||||||||| ||||||||||||||    
T  8096276 ttgttggtgtcattaaaaaaaagaatttagattatattttttttgttatatt 8096327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 484
Target Start/End: Complemental strand, 773278 - 773158
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaa-cnnnnnnnataataaagatcattgttggtatcattaaaaa-caagattttag 462  Q
    |||||||||| |||||||||||||||||||| |||||  ||||||||         |||||||||||| ||||| || ||||||||||  |||| | |||    
T  773278 tatatttatacttactttttcattatcccaattatattcttaaacaatttttttctataataaagatcgttgtt-gtgtcattaaaaataaagaatgtag 773180  T
Q  463 attatatattttttgttatatt 484  Q
    ||||||| ||||||||||||||    
T  773179 attatattttttttgttatatt 773158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 484
Target Start/End: Original strand, 41187734 - 41187781
Alignment:
Q  436 ttggtatcattaaaaacaagattttagattatatattttttgttatatt 484  Q
    ||||| |||||||||| |||| |||||||||||||||||||||||||||    
T  41187734 ttggtgtcattaaaaa-aagaatttagattatatattttttgttatatt 41187781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 484
Target Start/End: Complemental strand, 1531297 - 1531247
Alignment:
Q  433 ttgttggtatcattaaaaacaagattttagattatatattttttgttatatt 484  Q
    |||||||| |||||||||| |||| |||||||||||| ||||||||||||||    
T  1531297 ttgttggtgtcattaaaaa-aagaatttagattatattttttttgttatatt 1531247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 484
Target Start/End: Complemental strand, 16143490 - 16143440
Alignment:
Q  433 ttgttggtatcattaaaaacaagattttagattatatattttttgttatatt 484  Q
    |||||||| |||||||||| |||| |||| ||||||||||||||||||||||    
T  16143490 ttgttggtgtcattaaaaa-aagaatttaaattatatattttttgttatatt 16143440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 484
Target Start/End: Original strand, 34748855 - 34748905
Alignment:
Q  433 ttgttggtatcattaaaaacaagattttagattatatattttttgttatatt 484  Q
    |||||||| |||||||||| |||| |||||||||||| ||||||||||||||    
T  34748855 ttgttggtgtcattaaaaaaaagaatttagattatat-ttttttgttatatt 34748905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 484
Target Start/End: Original strand, 46880084 - 46880146
Alignment:
Q  421 taataaagatcattgttggtatcattaaaaacaagattttagattatatattttttgttatatt 484  Q
    ||||||||||  |||||||| |||||||||| |||| |||||||||||| ||||||| ||||||    
T  46880084 taataaagattgttgttggtgtcattaaaaaaaagaatttagattatat-ttttttgatatatt 46880146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 451
Target Start/End: Complemental strand, 13315311 - 13315237
Alignment:
Q  377 tactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaa 451  Q
    ||||||||||||||||||| ||||   |||||||||       |||||||||||  |||||||||||||||||||    
T  13315311 tactttttcattatcccaagtatacccttaaacaactttttctataataaagattgttgttggtatcattaaaaa 13315237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 489
Target Start/End: Original strand, 11409005 - 11409075
Alignment:
Q  420 ataataaagatcattgttggtatcatt--aaaaacaagattttagattatatattttttgttatattcttcg 489  Q
    |||||||||||  |||||||| |||||  ||||| |||| |||||||||||| |||||||||||||| ||||    
T  11409005 ataataaagattgttgttggtgtcattaaaaaaataagaatttagattatat-ttttttgttatattattcg 11409075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 484
Target Start/End: Original strand, 11978246 - 11978310
Alignment:
Q  420 ataataaagatcattgttggtatcattaaaaacaagattttagattatatattttttgttatatt 484  Q
    |||| ||| ||| |||||||| |||||||||| || | || ||||||||| ||||||||||||||    
T  11978246 ataaaaaaaatcgttgttggtgtcattaaaaaaaaaaattcagattatattttttttgttatatt 11978310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 479
Target Start/End: Original strand, 44648213 - 44648273
Alignment:
Q  420 ataataaagatcattgttggtatcatta-aaaacaagattttagattatatattttttgtt 479  Q
    |||||||||||  |||||||| |||||| |||| |||| |||||||||||| |||||||||    
T  44648213 ataataaagatgtttgttggtgtcattataaaaaaagagtttagattatattttttttgtt 44648273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 217 - 327
Target Start/End: Original strand, 6981490 - 6981599
Alignment:
Q  217 aaattaattgattcaaagattaaacaacacccaaatcactgttggaggttctctaatctaacattcatttcatttagatggaggagaaggcagttataac 316  Q
    |||||| |||||||||||||||| |||||||||||||| |||||||||| |||||||| ||||||| ||||||||||||| |||||||||||||||||||    
T  6981490 aaattatttgattcaaagattaa-caacacccaaatcattgttggaggtactctaatccaacattcctttcatttagatgcaggagaaggcagttataac 6981588  T
Q  317 atatcattcaa 327  Q
    | |||||||||    
T  6981589 agatcattcaa 6981599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 366 - 484
Target Start/End: Complemental strand, 30102644 - 30102527
Alignment:
Q  366 atatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagatt 465  Q
    ||||||||| |||||||||||||||| ||| ||||   |||||||||       |||||||||||| |||||||| |||||||||| |||| ||||||||    
T  30102644 atatttatacttactttttcattatctcaattatacccttaaacaactttttctataataaagatcgttgttggtgtcattaaaaa-aagaatttagatt 30102546  T
Q  466 atatattttttgttatatt 484  Q
    ||||  |||||||||||||    
T  30102545 atattctttttgttatatt 30102527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 365 - 476
Target Start/End: Complemental strand, 21824527 - 21824417
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagat 464  Q
    |||||||||| |||||||||||||||| ||| ||||   |||||||||       ||||||||||||||||||||| | |||||||| ||||  ||||||    
T  21824527 tatatttatacttactttttcattatctcaattatacccttaaacaactttttctataataaagatcattgttggtgttattaaaaa-aagaacttagat 21824429  T
Q  465 tatatatttttt 476  Q
    ||||||||||||    
T  21824428 tatatatttttt 21824417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 365 - 484
Target Start/End: Complemental strand, 42896909 - 42896791
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagat 464  Q
    |||||||||| ||||||||||||||| |||| ||||   |||||||||        ||||||||||  |||||||| |||||||||| |||| |||||||    
T  42896909 tatatttatacttactttttcattattccaattatagcattaaacaactttttctgtaataaagatgtttgttggtgtcattaaaaaaaagaatttagat 42896810  T
Q  465 tatatattttttgttatatt 484  Q
    ||||| ||||||||||||||    
T  42896809 tatat-ttttttgttatatt 42896791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 365 - 482
Target Start/End: Original strand, 3418759 - 3418874
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagat 464  Q
    |||||||||| ||||||||||||||| |||| ||||   |||||||||       |||||||||||  ||||||||||||||||||| |||| |||||||    
T  3418759 tatatttatacttactttttcattattccaattatacccttaaacaactttttctataataaagattgttgttggtatcattaaaaa-aagaatttagat 3418857  T
Q  465 tatatattttttgttata 482  Q
    ||||| | ||||||||||    
T  3418858 tatat-tcttttgttata 3418874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 420 - 484
Target Start/End: Original strand, 22526405 - 22526469
Alignment:
Q  420 ataataaagatcattgttggtatcattaaaaacaagattttagattatatattttttgttatatt 484  Q
    ||||||||||| ||||||||| ||||| |||| |||| |||||||||||| ||||||||||||||    
T  22526405 ataataaagattattgttggtctcattcaaaaaaagaatttagattatattttttttgttatatt 22526469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 365 - 465
Target Start/End: Original strand, 7777537 - 7777637
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagat 464  Q
    ||||||||||||||||||||||||||| |||||||| | ||||| ||         ||||||||||| |||||||| |||||||||| |||| |||||||    
T  7777537 tatatttatatttactttttcattatcacaaatatacacttaaataattttttctgtaataaagatcgttgttggtgtcattaaaaaaaagaatttagat 7777636  T
Q  465 t 465  Q
    |    
T  7777637 t 7777637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 365 - 484
Target Start/End: Complemental strand, 39822709 - 39822590
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagat 464  Q
    |||||| ||||||||||||||| ||||| |||||||   ||||||||        |||||||||||  |||||||| |  |||||||||||| |||| ||    
T  39822709 tatattcatatttactttttcaatatccaaaatatacccttaaacaattttttttataataaagattgttgttggtgttgttaaaaacaagaatttatat 39822610  T
Q  465 tatatattttttgttatatt 484  Q
    ||||| ||||||||||||||    
T  39822609 tatatcttttttgttatatt 39822590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 367 - 484
Target Start/End: Original strand, 50098979 - 50099095
Alignment:
Q  367 tatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagatta 466  Q
    |||||||| |||||||||||||||||||| ||||  || |||||||       |||||||||||  |||||||| |||||||||| | |  |||||||||    
T  50098979 tatttatacttactttttcattatcccaattatacctt-aaacaactttttctataataaagattgttgttggtgtcattaaaaaaaggcatttagatta 50099077  T
Q  467 tatattttttgttatatt 484  Q
    ||| |||| |||||||||    
T  50099078 tattttttctgttatatt 50099095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 484
Target Start/End: Complemental strand, 4577928 - 4577809
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagat 464  Q
    |||||||||| ||||||||||||||||| || | ||  |||||| ||        |||||||||||  |||||||| ||||| |||| |||| |||| ||    
T  4577928 tatatttatacttactttttcattatccaaattctacctttaaataattttttctataataaagattgttgttggtgtcatttaaaaaaagaatttatat 4577829  T
Q  465 tatatattttttgttatatt 484  Q
    ||||| ||||||||||||||    
T  4577828 tatattttttttgttatatt 4577809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 484
Target Start/End: Original strand, 25842311 - 25842425
Alignment:
Q  369 tttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagattata 468  Q
    |||||| |||||||||||||||||||| ||||   ||||| |||       |||||||||||| |||||| |||||||||||| || | |  ||||||||    
T  25842311 tttatacttactttttcattatcccaattatacccttaaataaccttttatataataaagatcgttgttgatatcattaaaaa-aaaaatcaagattata 25842409  T
Q  469 tattttttgttatatt 484  Q
    | ||||||||||||||    
T  25842410 ttttttttgttatatt 25842425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 476
Target Start/End: Original strand, 40360291 - 40360401
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagat 464  Q
    |||||||||| ||||||||||||||||| |  |||||  ||||||||        |||||||||||  |||||||| |||||||||| |||| |||||||    
T  40360291 tatatttatacttactttttcattatccaagttatatccttaaacaattttttctataataaagattgttgttggtgtcattaaaaa-aagaatttagat 40360389  T
Q  465 tatatatttttt 476  Q
    ||||| ||||||    
T  40360390 tatatttttttt 40360401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 6981372 - 6981417
Alignment:
Q  19 ttctaatcctcttgttcagtaaccttcccttgaaagttccagcatt 64  Q
    ||||||||||||||||||| ||||||| |||||| |||||||||||    
T  6981372 ttctaatcctcttgttcagcaaccttcgcttgaacgttccagcatt 6981417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 484
Target Start/End: Original strand, 14265818 - 14265881
Alignment:
Q  420 ataataaagatcattgttggtatcattaaaaacaagattttagattatatattttttgttatatt 484  Q
    |||||||||||  |||||| | |||||||||| |||| ||||||||||||| |||||||||||||    
T  14265818 ataataaagattgttgttgatgtcattaaaaaaaagaatttagattatata-tttttgttatatt 14265881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 451
Target Start/End: Original strand, 22102389 - 22102473
Alignment:
Q  367 tatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaa 451  Q
    |||||||| |||||||||||||||||||| ||||   |||||||||       |||||||||||  |||||||| ||||||||||    
T  22102389 tatttatacttactttttcattatcccaattatacccttaaacaactttttccataataaagattgttgttggtgtcattaaaaa 22102473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 451
Target Start/End: Original strand, 22177337 - 22177421
Alignment:
Q  367 tatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaa 451  Q
    |||||||| |||||||||||||||||||| ||||   |||||||||       |||||||||||  |||||||| ||||||||||    
T  22177337 tatttatacttactttttcattatcccaattatacccttaaacaactttttccataataaagattgttgttggtgtcattaaaaa 22177421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 484
Target Start/End: Original strand, 32560154 - 32560220
Alignment:
Q  420 ataataaagatcattgttggtatcatt--aaaaacaagattttagattatatattttttgttatatt 484  Q
    |||||||| ||  ||||||||||||||  ||||| |||| |||| ||||||||||||||||||||||    
T  32560154 ataataaaaattgttgttggtatcattcaaaaaataagaatttaaattatatattttttgttatatt 32560220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 484
Target Start/End: Original strand, 45644088 - 45644207
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcatt-aaaaacaagattttaga 463  Q
    |||||||||||||| |||||||||||||||| ||||   |||||||||       |||||||||||  | |||||| ||||| ||||| || | ||||||    
T  45644088 tatatttatatttagtttttcattatcccaattatacccttaaacaactttttctataataaagattgtcgttggtgtcattaaaaaataataatttaga 45644187  T
Q  464 ttatatattttttgttatatt 484  Q
    |||||| ||| ||||||||||    
T  45644188 ttatat-tttattgttatatt 45644207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 400
Target Start/End: Complemental strand, 52957699 - 52957664
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatata 400  Q
    ||||||||||||||||||||||||||||||| ||||    
T  52957699 tatatttatatttactttttcattatcccaattata 52957664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 412
Target Start/End: Complemental strand, 533666 - 533621
Alignment:
Q  367 tatttatatttactttttcattatcccaaatatatatttaaacaac 412  Q
    |||||||||||||| |||||||||||||| |||||  |||||||||    
T  533666 tatttatatttactctttcattatcccaattatatccttaaacaac 533621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 484
Target Start/End: Complemental strand, 8149590 - 8149528
Alignment:
Q  420 ataataaagatcattgttggtatcattaaaaacaagattttagattatatattttttgttatatt 484  Q
    |||||||||||  ||||||||||||||||||  || |  ||||||||||| ||||||||||||||    
T  8149590 ataataaagattgttgttggtatcattaaaa--aaaaagttagattatattttttttgttatatt 8149528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 484
Target Start/End: Original strand, 24487988 - 24488107
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaa--aaacaagattttag 462  Q
    |||||||||| ||| |||||||||||||||| |||| |||||| ||||       |||||||||||  |||||||| |||||||  ||| |||| ||||     
T  24487988 tatatttatacttattttttcattatcccaattatacatttaa-caactttttatataataaagattcttgttggtgtcattaaagaaaaaagaatttac 24488086  T
Q  463 attatatattttttgttatatt 484  Q
    || |||| ||||||||||||||    
T  24488087 ataatat-ttttttgttatatt 24488107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 484
Target Start/End: Original strand, 41923355 - 41923420
Alignment:
Q  420 ataataaagatcattgttggtatcattaaaaacaa-gattttagattatatattttttgttatatt 484  Q
    |||||||| ||  |||||||| |||||||||| || || |||||||||||| ||||||||||||||    
T  41923355 ataataaaaattgttgttggtgtcattaaaaaaaaagaatttagattatattttttttgttatatt 41923420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 482
Target Start/End: Complemental strand, 49429776 - 49429661
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaaca--agattttag 462  Q
    |||||||||| |||||||||||||||| ||| ||||   |||||||||       |||||||||   ||||||||| |||||||||| |  ||| |||||    
T  49429776 tatatttatacttactttttcattatctcaattatacccttaaacaactttttctataataaag---attgttggtgtcattaaaaaaaatagaatttag 49429680  T
Q  463 attatatattttttgttata 482  Q
    ||||||| ||||||||||||    
T  49429679 attatat-ttttttgttata 49429661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 484
Target Start/End: Complemental strand, 1149407 - 1149345
Alignment:
Q  420 ataataaagatcattgttggtatcattaaaaacaagattttagattatatattttttgttatatt 484  Q
    |||||||||||  |||||||| || ||||||| |||| |||||||||||| ||||||||||||||    
T  1149407 ataataaagattgttgttggtctc-ttaaaaaaaagaatttagattatat-ttttttgttatatt 1149345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 484
Target Start/End: Original strand, 27947780 - 27947827
Alignment:
Q  436 ttggtatcattaaaaacaagattttagattatatattttttgttatatt 484  Q
    ||||| |||||||||| |||| |||||||||||| ||||||||||||||    
T  27947780 ttggtgtcattaaaaa-aagaatttagattatattttttttgttatatt 27947827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 484
Target Start/End: Complemental strand, 42401615 - 42401551
Alignment:
Q  420 ataataaagatcattgttggtatcattaaaaacaagattttagattatatattttttgttatatt 484  Q
    ||||||| |||  |||||||| || ||||||| |||| |||| ||||||| ||||||||||||||    
T  42401615 ataataatgattgttgttggtgtcgttaaaaaaaagaatttatattatattttttttgttatatt 42401551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 9e-25; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 365 - 484
Target Start/End: Original strand, 28146036 - 28146154
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagat 464  Q
    |||||||||| ||||||||||||||||||||||||||  |||||| ||       |||||||| ||| |||||||| ||||||||||||||| |||||||    
T  28146036 tatatttatacttactttttcattatcccaaatatatcattaaactactttttctataataaatatcgttgttggtgtcattaaaaacaagaatttagat 28146135  T
Q  465 tatatattttttgttatatt 484  Q
    |||||| |||||||||||||    
T  28146136 tatata-tttttgttatatt 28146154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 365 - 484
Target Start/End: Original strand, 41122638 - 41122755
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagat 464  Q
    |||||||||| ||||||||| ||||||||||  |||   |||||||||       |||||||||||  |||||||| |||||||||| |||| |||||||    
T  41122638 tatatttatacttacttttttattatcccaatcatacccttaaacaacattttttataataaagattgttgttggtgtcattaaaaaaaagaatttagat 41122737  T
Q  465 tatatattttttgttatatt 484  Q
      ||||||||||||||||||    
T  41122738 --tatattttttgttatatt 41122755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 365 - 484
Target Start/End: Complemental strand, 30977103 - 30976985
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagat 464  Q
    |||||||||| |||||||||||| ||||||| ||||   | || ||||       |||||||||||  |||||||| |||||||||| |||| |||||||    
T  30977103 tatatttatacttactttttcatcatcccaattatacgctcaatcaactttttatataataaagattgttgttggtgtcattaaaaa-aagaatttagat 30977005  T
Q  465 tatatattttttgttatatt 484  Q
    ||||||||||||| ||||||    
T  30977004 tatatattttttgatatatt 30976985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 365 - 484
Target Start/End: Complemental strand, 35126047 - 35125928
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagat 464  Q
    |||||||||| || ||||||||||||||||| ||||   |||||||||       |||||||||||  |||||||| |||||||||  |||| ||||| |    
T  35126047 tatatttatacttgctttttcattatcccaattatactcttaaacaactttttcaataataaagattgttgttggtgtcattaaaataaagaatttaggt 35125948  T
Q  465 tatatattttttgttatatt 484  Q
    |||||  |||||||||||||    
T  35125947 tatattgtttttgttatatt 35125928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 420 - 484
Target Start/End: Original strand, 36080250 - 36080313
Alignment:
Q  420 ataataaagatcattgttggtatcattaaaaacaagattttagattatatattttttgttatatt 484  Q
    |||||||||||  |||||||| |||||||||| |||| |||||||||||| ||||||||||||||    
T  36080250 ataataaagattgttgttggtgtcattaaaaataagaatttagattatat-ttttttgttatatt 36080313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 433 - 484
Target Start/End: Complemental strand, 3357724 - 3357673
Alignment:
Q  433 ttgttggtatcattaaaaacaagattttagattatatattttttgttatatt 484  Q
    |||||||| |||||||||| |||| |||||||||||| ||||||||||||||    
T  3357724 ttgttggtgtcattaaaaaaaagaatttagattatattttttttgttatatt 3357673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 381 - 484
Target Start/End: Complemental strand, 41384588 - 41384488
Alignment:
Q  381 ttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagattatatattttttgtta 480  Q
    ||||||||||||||| |||||  |||||||||       |||||||||||  ||| ||||||||||||||| |||| |||||||  ||||||||||||||    
T  41384588 ttttcattatcccaattatatccttaaacaactttttctataataaagatttttgatggtatcattaaaaa-aagaatttagat--tatattttttgtta 41384492  T
Q  481 tatt 484  Q
    ||||    
T  41384491 tatt 41384488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 433 - 484
Target Start/End: Original strand, 42949766 - 42949817
Alignment:
Q  433 ttgttggtatcattaaaaacaagattttagattatatattttttgttatatt 484  Q
    |||||||| |||||||||| |||| |||||||||||| ||||||||||||||    
T  42949766 ttgttggtgtcattaaaaaaaagaatttagattatattttttttgttatatt 42949817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 451
Target Start/End: Complemental strand, 7603769 - 7603683
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaa 451  Q
    |||||||||||||||||||||| |||||||| ||||   |||||||||       |||||||||||| ||||| || ||||||||||    
T  7603769 tatatttatatttactttttcactatcccaattatactcttaaacaactttttctataataaagatcgttgtttgtgtcattaaaaa 7603683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 474
Target Start/End: Original strand, 42185747 - 42185857
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcatt-aaaaacaagattttaga 463  Q
    |||||||||| |||||||||||||||| ||| |||| ||||||||||        |||||||| |   |||||||| ||||| ||||| |||||||||||    
T  42185747 tatatttatacttactttttcattatctcaattatacatttaaacaattttttctataataaatactgttgttggtgtcattaaaaaaaaagattttaga 42185846  T
Q  464 ttatatatttt 474  Q
    |||||| ||||    
T  42185847 ttatatttttt 42185857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 484
Target Start/End: Original strand, 12069422 - 12069527
Alignment:
Q  376 ttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagattatatattttt 475  Q
    ||||||||||||||||| || ||||   |||||||||       |||||||||||  |||||||| |||||||||| |||| |||||||  |||||||||    
T  12069422 ttactttttcattatcctaattatactcttaaacaactttttctataataaagattgttgttggtgtcattaaaaa-aagaatttagat--tatattttt 12069518  T
Q  476 tgttatatt 484  Q
    |||||||||    
T  12069519 tgttatatt 12069527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 484
Target Start/End: Original strand, 33312996 - 33313046
Alignment:
Q  433 ttgttggtatcattaaaaacaagattttagattatatattttttgttatatt 484  Q
    |||||| | |||||||||| |||| |||||||||||||||||||||||||||    
T  33312996 ttgttgatgtcattaaaaa-aagaatttagattatatattttttgttatatt 33313046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 484
Target Start/End: Original strand, 12069661 - 12069722
Alignment:
Q  420 ataataaagatcattgttggtatcattaaaaacaagattttagattatatattttttgttatatt 484  Q
    |||||||||||  |||||||| |||||||||| |||| |||||||  ||||||||||||||||||    
T  12069661 ataataaagattgttgttggtgtcattaaaaa-aagaatttagat--tatattttttgttatatt 12069722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 469
Target Start/End: Complemental strand, 13594310 - 13594261
Alignment:
Q  420 ataataaagatcattgttggtatcattaaaaacaagattttagattatat 469  Q
    |||||||||||| |||||| | |||||||||| |||| ||||||||||||    
T  13594310 ataataaagatcgttgttgatgtcattaaaaaaaagaatttagattatat 13594261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 469
Target Start/End: Original strand, 18072398 - 18072447
Alignment:
Q  420 ataataaagatcattgttggtatcattaaaaacaagattttagattatat 469  Q
    |||||||||||  |||||||| |||||||||| |||| ||||||||||||    
T  18072398 ataataaagattgttgttggtgtcattaaaaaaaagaatttagattatat 18072447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 365 - 401
Target Start/End: Original strand, 1397035 - 1397071
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatat 401  Q
    |||||||||| |||||||||||||||||||| |||||    
T  1397035 tatatttatacttactttttcattatcccaattatat 1397071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 484
Target Start/End: Original strand, 38692577 - 38692640
Alignment:
Q  420 ataataaagatcattgttggtatcattaaaaacaagattttagattatatattttttgttatatt 484  Q
    |||||||||||  || ||||| ||||||||||  ||| |||||||||||| ||||||||||||||    
T  38692577 ataataaagattgttattggtgtcattaaaaaatagaatttagattatat-ttttttgttatatt 38692640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 480
Target Start/End: Complemental strand, 42060477 - 42060418
Alignment:
Q  420 ataataaagatcattgttggtatcattaaaaacaagattttagattatatattttttgtta 480  Q
    |||||||| ||  |||||||| |||||||||| |||| ||||||||||| |||||||||||    
T  42060477 ataataaaaattgttgttggtgtcattaaaaaaaagaatttagattata-attttttgtta 42060418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 365 - 484
Target Start/End: Complemental strand, 2475163 - 2475045
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagat 464  Q
    |||||||||| |||||||||||||||||||| |||||  ||||||||        |||||||||||| |||||||| |||||||||| |||| |||||||    
T  2475163 tatatttatacttactttttcattatcccaattatatgcttaaacaattttttcaataataaagatcgttgttggtgtcattaaaaaaaagaatttagat 2475064  T
Q  465 tatatattttttgttatatt 484  Q
    |||| ||||||||| |||||    
T  2475063 tata-attttttgtaatatt 2475045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 365 - 484
Target Start/End: Original strand, 19371692 - 19371811
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagat 464  Q
    |||||||||| |||||||||||||||||||| ||||   |||||||||       |||||||||||  |||||||| |||||||||| |||| |||||||    
T  19371692 tatatttatacttactttttcattatcccaattatacccttaaacaactttttctataataaagattgttgttggtgtcattaaaaaaaagaatttagat 19371791  T
Q  465 tatatattttttgttatatt 484  Q
    ||||| |||| |||||||||    
T  19371792 tatattttttctgttatatt 19371811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 484
Target Start/End: Original strand, 23050834 - 23050950
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagat 464  Q
    |||||||||| |||||||||||||||||||| ||||   |||||||||       |||||||||||  ||||| || |||||||||| |||| |||||||    
T  23050834 tatatttatacttactttttcattatcccaattatacccttaaacaactatttttataataaagattgttgtttgtgtcattaaaaaaaagaatttagat 23050933  T
Q  465 tatatattttttgttatatt 484  Q
    |   | ||||||||||||||    
T  23050934 t---ttttttttgttatatt 23050950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 365 - 484
Target Start/End: Original strand, 39151758 - 39151874
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagat 464  Q
    |||||||||| ||||||||| || ||| ||| ||||| ||||||||||       |||||||||||  |||||||| | |||||||| |||| |||||||    
T  39151758 tatatttatacttacttttttatcatcacaattatatctttaaacaactttttctataataaagattgttgttggtgttattaaaaa-aagaatttagat 39151856  T
Q  465 tatatattttttgttatatt 484  Q
    ||||  ||||||||||||||    
T  39151857 tata--ttttttgttatatt 39151874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 365 - 484
Target Start/End: Complemental strand, 48624888 - 48624768
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagat 464  Q
    |||||||||| ||||||||| |||||||||| ||||   |||||||||       |||||||||||| |||||||| ||| |||||  |||| |||||||    
T  48624888 tatatttatacttacttttttattatcccaattatacccttaaacaactttttctataataaagatcgttgttggtgtcactaaaacaaagaatttagat 48624789  T
Q  465 tatatatttttt-gttatatt 484  Q
    | ||| |||||| ||||||||    
T  48624788 tttattttttttagttatatt 48624768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 480
Target Start/End: Original strand, 39434903 - 39435015
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagat 464  Q
    ||||||||||||||||||||||||||||||  |||||  ||||| ||        |||||||||||  |||||||| |||||||||| |||| |||||||    
T  39434903 tatatttatatttactttttcattatcccatttatatccttaaa-aattttttttataataaagattgttgttggtgtcattaaaaa-aagaatttagat 39435000  T
Q  465 tatatattttttgtta 480  Q
    ||||| ||||||||||    
T  39435001 tatat-ttttttgtta 39435015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 484
Target Start/End: Complemental strand, 21093717 - 21093604
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagat 464  Q
    |||||||||| |||||||| ||||||  ||| |||||  |||||||||       ||||||||||||||||||||| |||||||||| ||    ||||||    
T  21093717 tatatttatacttactttt-cattatttcaattatatcattaaacaactttttctataataaagatcattgttggtgtcattaaaaaaaa----ttagat 21093623  T
Q  465 tatatattttttgttatatt 484  Q
    ||||| ||||||||||||||    
T  21093622 tatat-ttttttgttatatt 21093604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 475
Target Start/End: Complemental strand, 48110377 - 48110267
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagat 464  Q
    |||||||||| ||||||||| |||||||||| ||||   |||||||||       |||||||||||| |||||||| ||| |||| | |||| |||| ||    
T  48110377 tatatttataattacttttttattatcccaattatactcttaaacaacattttctataataaagatcgttgttggtttcactaaacaaaagaatttatat 48110278  T
Q  465 tatatattttt 475  Q
    ||||| |||||    
T  48110277 tatattttttt 48110267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 484
Target Start/End: Original strand, 7525779 - 7525899
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcatt-aaaaacaagattttaga 463  Q
    |||||||||| ||||||||||||| |||| | ||||   ||||||||        |||||||||||| |||||||| ||||| ||||| |||| ||||||    
T  7525779 tatatttatacttactttttcattgtcccgattatacccttaaacaatttttcggataataaagatcgttgttggtgtcattaaaaaaaaagaatttaga 7525878  T
Q  464 ttatatattttttgttatatt 484  Q
    |||||  |||| |||||||||    
T  7525879 ttatactttttatgttatatt 7525899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 484
Target Start/End: Complemental strand, 10199699 - 10199649
Alignment:
Q  433 ttgttggtatcattaaaaacaagattttagattatatattttttgttatatt 484  Q
    |||||||| |||||||||| |||| |||||||||||| ||||||||||||||    
T  10199699 ttgttggtgtcattaaaaa-aagaatttagattatattttttttgttatatt 10199649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 484
Target Start/End: Complemental strand, 38598594 - 38598532
Alignment:
Q  420 ataataaagatcattgttggtatcattaaaaacaagattttagattatatattttttgttatatt 484  Q
    |||||||||||  ||||| || |||||||||| |||| |||||||||||| ||||||||||||||    
T  38598594 ataataaagatgtttgttagtgtcattaaaaa-aagaatttagattatat-ttttttgttatatt 38598532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 365 - 484
Target Start/End: Original strand, 34966667 - 34966785
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagat 464  Q
    |||||||||| |||||||||||||||| ||| ||||   |||||||||       |||||||||||  |||||||| |||||||||| |||| |||||||    
T  34966667 tatatttatacttactttttcattatctcaattatacccttaaacaactttttctataataaagatttttgttggtgtcattaaaaa-aagaatttagat 34966765  T
Q  465 tatatattttttgttatatt 484  Q
    ||||| ||||||||||||||    
T  34966766 tatattttttttgttatatt 34966785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 365 - 484
Target Start/End: Complemental strand, 15919652 - 15919533
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcatt-aaaaacaagattttaga 463  Q
    |||||||||| |||||||||||||||||||| ||||   |||||||||       ||||||||||   |||||||| ||||| ||||| |||| ||||||    
T  15919652 tatatttatacttactttttcattatcccaattatacccttaaacaactttctctataataaagaatgttgttggtgtcattaaaaaaaaagaatttaga 15919553  T
Q  464 ttatatattttttgttatatt 484  Q
    |||||| ||||||||||||||    
T  15919552 ttatat-ttttttgttatatt 15919533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 365 - 484
Target Start/End: Original strand, 27837518 - 27837635
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagat 464  Q
    |||||||||||||||||||||||||||  || |||| |||||||||||       || ||||||||  |||||||  |||||||||| |||| |||| ||    
T  27837518 tatatttatatttactttttcattatcttaattatacatttaaacaactaattctat-ataaagattgttgttggggtcattaaaaaaaagaatttaaat 27837616  T
Q  465 tatatattttttgttatatt 484  Q
    ||||| ||||||||||||||    
T  27837617 tatat-ttttttgttatatt 27837635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 365 - 447
Target Start/End: Original strand, 29684202 - 29684284
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcatta 447  Q
    |||||||||| |||||||||||||||||||| ||||  ||||||||||       |||||||||||| |||||||| ||||||    
T  29684202 tatatttatacttactttttcattatcccaattatacttttaaacaactttttctataataaagatcgttgttggtgtcatta 29684284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 432 - 484
Target Start/End: Complemental strand, 15044322 - 15044269
Alignment:
Q  432 attgttggtatcattaaaaacaa-gattttagattatatattttttgttatatt 484  Q
    ||||||||| |||||||||| || || |||||||||||||||||||||||||||    
T  15044322 attgttggtgtcattaaaaaaaaagaatttagattatatattttttgttatatt 15044269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 469
Target Start/End: Original strand, 3739546 - 3739650
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagat 464  Q
    |||||||||| | |||||||||||||||||| ||||  ||||||||||       ||||||||| |  |||||||| |||||||||| | || |||| ||    
T  3739546 tatatttatactgactttttcattatcccaattatacctttaaacaactttttctataataaaggttgttgttggtgtcattaaaaaaatgaatttaaat 3739645  T
Q  465 tatat 469  Q
    |||||    
T  3739646 tatat 3739650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 411
Target Start/End: Complemental strand, 4437939 - 4437893
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaa 411  Q
    |||||||||| |||||||||||||||||||| |||||  ||||||||    
T  4437939 tatatttatacttactttttcattatcccaattatatcattaaacaa 4437893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 395
Target Start/End: Complemental strand, 12471150 - 12471116
Alignment:
Q  361 atgttatatttatatttactttttcattatcccaa 395  Q
    |||||||||||||| ||||||||||||||||||||    
T  12471150 atgttatatttatacttactttttcattatcccaa 12471116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 420 - 484
Target Start/End: Complemental strand, 18279413 - 18279352
Alignment:
Q  420 ataataaagatcattgttggtatcattaaaaacaagattttagattatatattttttgttatatt 484  Q
    |||||||||||  |||||||| |||||||||| || ||   ||||||||||||||||||||||||    
T  18279413 ataataaagatggttgttggtttcattaaaaaaaaaat---agattatatattttttgttatatt 18279352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 484
Target Start/End: Complemental strand, 41942586 - 41942470
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagat 464  Q
    |||||||||| |||||||||||||||| ||| ||||   |||||||||       |||||||||||  |||| ||| |||||||||| || | |||||||    
T  41942586 tatatttatacttactttttcattatctcaattatacccttaaacaactttttctataataaagattgttgtgggtgtcattaaaaa-aata-tttagat 41942489  T
Q  465 tatatattttttgttatatt 484  Q
    ||||| ||||||||||||||    
T  41942488 tatat-ttttttgttatatt 41942470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 484
Target Start/End: Complemental strand, 14436686 - 14436649
Alignment:
Q  447 aaaaacaagattttagattatatattttttgttatatt 484  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  14436686 aaaaataagaatttagattatatattttttgttatatt 14436649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 398
Target Start/End: Original strand, 18443076 - 18443109
Alignment:
Q  365 tatatttatatttactttttcattatcccaaata 398  Q
    |||||||||| |||||||||||||||||||||||    
T  18443076 tatatttataattactttttcattatcccaaata 18443109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 365 - 401
Target Start/End: Original strand, 38283630 - 38283666
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatat 401  Q
    |||||||||| |||||||||||||||||||| |||||    
T  38283630 tatatttatacttactttttcattatcccaattatat 38283666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 420 - 484
Target Start/End: Original strand, 36700806 - 36700870
Alignment:
Q  420 ataataaagatcattgttggtatcattaaaaacaagattttagattatatattttttgttatatt 484  Q
    ||||||||||| ||||||||| |||||||||| |||| |||| ||||||||||||||||||||||    
T  36700806 ataataaagattattgttggtgtcattaaaaaaaagaatttaaattatatattttttgttatatt 36700870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 365 - 484
Target Start/End: Complemental strand, 38697102 - 38696985
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagat 464  Q
    |||||||||| |||||||| ||||||||||| |||||  ||||||||        |||||||||||  |||||||| |||||||||| |||| |||||||    
T  38697102 tatatttatacttacttttccattatcccaattatatccttaaacaattttttctataataaagattgttgttggtgtcattaaaaa-aagaatttagat 38697004  T
Q  465 tatatattttttgttatatt 484  Q
    ||||| ||||||||||||||    
T  38697003 tatat-ttttttgttatatt 38696985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 365 - 476
Target Start/End: Original strand, 19650678 - 19650786
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagat 464  Q
    |||||||||| |||||||||||||||||||| ||||  ||||||||||       |||||||||||  ||||||||  ||||||||| ||   |||||||    
T  19650678 tatatttatacttactttttcattatcccaattatacctttaaacaactttttctataataaagattgttgttggtgccattaaaaaaaa---tttagat 19650774  T
Q  465 tatatatttttt 476  Q
    ||||||||||||    
T  19650775 tatatatttttt 19650786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 365 - 451
Target Start/End: Original strand, 28003212 - 28003298
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaa 451  Q
    ||||||||||||||||||||||||||||||| ||||   |||||||||        ||||||||||| |||||||| ||||||||||    
T  28003212 tatatttatatttactttttcattatcccaattatacgcttaaacaactttttatgtaataaagatcgttgttggtgtcattaaaaa 28003298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 420 - 484
Target Start/End: Complemental strand, 5776565 - 5776501
Alignment:
Q  420 ataataaagatcattgttggtatcattaaaaacaagattttagattatatattttttgttatatt 484  Q
    |||||||||||  |||||||||||||| |||| || | |||||||||||| ||||||||||||||    
T  5776565 ataataaagattgttgttggtatcatttaaaaaaaaaatttagattatattttttttgttatatt 5776501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 365 - 484
Target Start/End: Complemental strand, 19128701 - 19128578
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaa-----gattt 459  Q
    |||||||||| ||||||||||||||| |||| ||||   |||||||||       |||||||||||| |||||||| |||||||||| ||     || ||    
T  19128701 tatatttatacttactttttcattattccaattatacccttaaacaactttttctataataaagatcgttgttggtgtcattaaaaaaaaaaaaagaatt 19128602  T
Q  460 tagattatatattttttgttatatt 484  Q
    |||||||||| ||||||||||||||    
T  19128601 tagattatat-ttttttgttatatt 19128578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 420 - 482
Target Start/End: Complemental strand, 7938173 - 7938112
Alignment:
Q  420 ataataaagatcattgttggtatcattaaaaacaagattttagattatatattttttgttata 482  Q
    |||||||||||| ||||| || |||||||||| |||| ||||||||||| |||||||||||||    
T  7938173 ataataaagatcgttgttcgtgtcattaaaaaaaagaatttagattata-attttttgttata 7938112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 475
Target Start/End: Original strand, 28766267 - 28766378
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaa-gattttaga 463  Q
    ||||||| ||||||||||||||||||||||  ||||   ||||||||        |||||||||||  |||||||| | |||||||| || |||||||||    
T  28766267 tatatttctatttactttttcattatcccagttatactcttaaacaattttttctataataaagattgttgttggtgtaattaaaaaaaaagattttaga 28766366  T
Q  464 ttatatattttt 475  Q
    ||||||||||||    
T  28766367 ttatatattttt 28766378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 484
Target Start/End: Complemental strand, 38445647 - 38445529
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagat 464  Q
    |||||||||||||||| ||| | |||||||| |||||  ||||||||        |||||||| || |||||||||||||||||||| |||| | ||||     
T  38445647 tatatttatatttactcttttactatcccaattatatccttaaacaattttttctataataaaaattattgttggtatcattaaaaaaaagaatatagaa 38445548  T
Q  465 tatatattttttgttatatt 484  Q
    ||| | ||||||||||||||    
T  38445547 tat-ttttttttgttatatt 38445529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 484
Target Start/End: Original strand, 10542976 - 10543097
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcatta--aaaacaagattttag 462  Q
    ||||| || |||||||||||||||||  ||| |||||  |||||||||       | ||||||||| ||| ||||| ||||||  |||| |||| |||||    
T  10542976 tatatctacatttactttttcattatttcaattatatccttaaacaactttttgtaaaataaagattattattggtgtcattagaaaaataagaatttag 10543075  T
Q  463 attatatattttttgttatatt 484  Q
     |||||||||||||||||||||    
T  10543076 tttatatattttttgttatatt 10543097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 451
Target Start/End: Original strand, 832150 - 832236
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaa 451  Q
    |||||||||| ||||||||| |||||||||| ||||  ||||||||||       |||||||||||  |||||||| |||| |||||    
T  832150 tatatttatacttacttttttattatcccaattatacctttaaacaactttttctataataaagattgttgttggtgtcatgaaaaa 832236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 484
Target Start/End: Complemental strand, 25782045 - 25781980
Alignment:
Q  420 ataataaagatcattgttggtatcattaaaaac-aagattttagattatatattttttgttatatt 484  Q
    |||||||| ||  |||||||| ||||||||||  |||| |||||||||||| ||||||||||||||    
T  25782045 ataataaaaattgttgttggtgtcattaaaaaataagaatttagattatattttttttgttatatt 25781980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 484
Target Start/End: Original strand, 39850858 - 39850923
Alignment:
Q  420 ataataaagatcattgttggtatcattaaaaacaa-gattttagattatatattttttgttatatt 484  Q
    |||||||||||  |||||||| |||||||||| || || |||| ||||||| ||||||||||||||    
T  39850858 ataataaagattgttgttggtgtcattaaaaaaaaagagtttatattatattttttttgttatatt 39850923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 484
Target Start/End: Complemental strand, 7649100 - 7649037
Alignment:
Q  420 ataataaagatcattgttggtatcattaaaaacaagattttagattatatattttttgttatatt 484  Q
    |||||||||||  |||||||| |||||||||| |||| |||| ||||| | ||||||||||||||    
T  7649100 ataataaagattgttgttggtgtcattaaaaaaaagaatttatattat-ttttttttgttatatt 7649037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 484
Target Start/End: Complemental strand, 15988333 - 15988270
Alignment:
Q  420 ataataaagatcattgttggtatcattaaaaacaagattttagattatatattttttgttatatt 484  Q
    |||||||||||| |||||| | |||||||||| || | ||| |||||||| ||||||||||||||    
T  15988333 ataataaagatcgttgttgatgtcattaaaaaaaatacttttgattatat-ttttttgttatatt 15988270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 451
Target Start/End: Original strand, 36226436 - 36226521
Alignment:
Q  366 atatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaa 451  Q
    ||||||||| |||||||||||||||| ||| ||||   |||||||||       |||||||||||  |||||||| ||||||||||    
T  36226436 atatttatacttactttttcattatctcaattatacccttaaacaactttttctataataaagattgttgttggtgtcattaaaaa 36226521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 365 - 476
Target Start/End: Original strand, 20702323 - 20702434
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagat 464  Q
    |||||||||| ||||||||||||||| |||| ||||   |||||||||       |||||||||||| |||||||| ||||| |||| |||| |||||||    
T  20702323 tatatttatacttactttttcattattccaattatacccttaaacaactttttctataataaagatcgttgttggtgtcattgaaaaaaagaatttagat 20702422  T
Q  465 tatatatttttt 476  Q
    ||||| ||||||    
T  20702423 tatatttttttt 20702434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 365 - 484
Target Start/End: Complemental strand, 35447258 - 35447140
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagat 464  Q
    |||||||||| ||||| ||||||||||||||  ||| | |||||||||       ||||||| ||||||||||||| ||||||| || | || |||||||    
T  35447258 tatatttatacttactatttcattatcccaataatacacttaaacaactttttctataataaggatcattgttggtgtcattaagaa-aggaatttagat 35447160  T
Q  465 tatatattttttgttatatt 484  Q
    ||||| ||||||||||||||    
T  35447159 tatattttttttgttatatt 35447140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 365 - 484
Target Start/End: Complemental strand, 27376433 - 27376317
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagat 464  Q
    |||||||||| |||||||||||||||||||| ||||   ||||| ||        |||||||||||  |||||||| |||||||||| |||| |||||||    
T  27376433 tatatttatacttactttttcattatcccaattatacccttaaaaaa--atttctataataaagattgttgttggtgtcattaaaaaaaagaatttagat 27376336  T
Q  465 tatatattttttgttatatt 484  Q
    |||| |||||||||||||||    
T  27376335 tata-attttttgttatatt 27376317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 411
Target Start/End: Complemental strand, 47045249 - 47045203
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaa 411  Q
    |||||||||| |||||||||||||||||||| ||||| |||||||||    
T  47045249 tatatttatacttactttttcattatcccaattatatctttaaacaa 47045203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 484
Target Start/End: Complemental strand, 4959006 - 4958890
Alignment:
Q  368 atttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagatt-ttagatta 466  Q
    ||||||| |||||||||| ||||| ||||||||   |||||||||       |||||||| ||  |||||||| |||||||||| || | | ||||||||    
T  4959006 atttatacttactttttctttatctcaaatatactcttaaacaactttttctataataaa-attgttgttggtttcattaaaaaaaaaaatattagatta 4958908  T
Q  467 tatattttttgttatatt 484  Q
    ||||||||||||||||||    
T  4958907 tatattttttgttatatt 4958890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 484
Target Start/End: Original strand, 13781502 - 13781561
Alignment:
Q  424 taaagatcattgttggtatcattaaaaacaagattttagattatatattttttgttatatt 484  Q
    ||||||| ||||||||| |||||| ||| |||| ||||||||||||| |||||||||||||    
T  13781502 taaagattattgttggtgtcattataaaaaagaatttagattatata-tttttgttatatt 13781561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 484
Target Start/End: Complemental strand, 26878720 - 26878604
Alignment:
Q  367 tatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagatta 466  Q
    |||||||| ||||||||||||||||  || ||||| ||||||||||       |||| ||||||  |||||||| |||||| ||| |||| |||| ||||    
T  26878720 tatttatacttactttttcattatcttaattatatctttaaacaactttttttataacaaagattgttgttggtgtcattacaaaaaagaatttatatta 26878621  T
Q  467 tatattttttgttatatt 484  Q
    ||| |||||| |||||||    
T  26878620 tat-ttttttattatatt 26878604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 484
Target Start/End: Original strand, 31138884 - 31138935
Alignment:
Q  432 attgttggtatcattaaaaacaagattttagattatatattttttgttatatt 484  Q
    |||||| ||||||||||||| |||| |||||||||||| ||||||||||||||    
T  31138884 attgttagtatcattaaaaaaaagaatttagattatat-ttttttgttatatt 31138935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 484
Target Start/End: Original strand, 49574849 - 49574965
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagat 464  Q
    |||||||||| ||| ||||||||| |  ||| ||||| |||||||||        |||||||||||| |||||||| |||||||||| ||    ||||||    
T  49574849 tatatttatacttattttttcattgtttcaattatatctttaaacaaatttttctataataaagatcgttgttggtgtcattaaaaaaaa---attagat 49574945  T
Q  465 tatatattttttgttatatt 484  Q
    ||||| ||||||||||||||    
T  49574946 tatattttttttgttatatt 49574965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 476
Target Start/End: Original strand, 36927010 - 36927053
Alignment:
Q  433 ttgttggtatcattaaaaacaagattttagattatatatttttt 476  Q
    |||||||| |||||||||| |||| |||||||||||||||||||    
T  36927010 ttgttggtgtcattaaaaaaaagaatttagattatatatttttt 36927053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 412
Target Start/End: Complemental strand, 36963066 - 36963020
Alignment:
Q  366 atatttatatttactttttcattatcccaaatatatatttaaacaac 412  Q
    ||||||||| ||||||||| |||||||||| |||| |||||||||||    
T  36963066 atatttatacttacttttttattatcccaattatacatttaaacaac 36963020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 451
Target Start/End: Complemental strand, 47931446 - 47931360
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaa 451  Q
    |||||||||| |||||||||| ||||||||| ||||   |||||||||       |||||||||||  |||||||| ||||||||||    
T  47931446 tatatttatacttactttttctttatcccaattatacccttaaacaactttttatataataaagattgttgttggtgtcattaaaaa 47931360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 400
Target Start/End: Complemental strand, 1580126 - 1580090
Alignment:
Q  364 ttatatttatatttactttttcattatcccaaatata 400  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  1580126 ttatatttatacttactttttcattatcccaattata 1580090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 367 - 484
Target Start/End: Original strand, 6196613 - 6196733
Alignment:
Q  367 tatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaa--caagattttagat 464  Q
    |||||||| ||||||||| ||||| |||| ||||   |||||||||       |||||||||||  |||||||| ||||||||||   |||| |||| ||    
T  6196613 tatttatacttacttttttattattccaattatacccttaaacaactttttgtataataaagattgttgttggtgtcattaaaaaagtaagaatttaaat 6196712  T
Q  465 tatatat-tttttgttatatt 484  Q
    ||||||| |||||||||||||    
T  6196713 tatatatgtttttgttatatt 6196733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 376 - 484
Target Start/End: Original strand, 34659216 - 34659325
Alignment:
Q  376 ttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcatt--aaaaacaagattttagattatata-tt 472  Q
    |||||||||||||| ||||| |||||  |||||||||       |||||||||||||  |||||| |||||  ||||| || | ||||||||||||| ||    
T  34659216 ttactttttcattaccccaattatattcttaaacaactttttttataataaagatca--gttggtgtcattaaaaaaataaaaatttagattatatattt 34659313  T
Q  473 ttttgttatatt 484  Q
    ||||||||||||    
T  34659314 ttttgttatatt 34659325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 484
Target Start/End: Original strand, 37830959 - 37831022
Alignment:
Q  420 ataataaagatcattgttggtatcattaaaaacaagattttagattatatattttttgttatatt 484  Q
    |||||| ||||  |||||| |||||||||||| |||| |||||||||||| |||||| |||||||    
T  37830959 ataatagagattgttgttgatatcattaaaaa-aagaatttagattatattttttttattatatt 37831022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 367 - 411
Target Start/End: Complemental strand, 44182354 - 44182310
Alignment:
Q  367 tatttatatttactttttcattatcccaaatatatatttaaacaa 411  Q
    ||||||||||||||||||||||||||||  |||||  ||||||||    
T  44182354 tatttatatttactttttcattatcccagttatatccttaaacaa 44182310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 450
Target Start/End: Original strand, 46196732 - 46196813
Alignment:
Q  369 tttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaa 450  Q
    |||||| |||||||||||||||||||| |||   ||||||||||       |||||||||||  |||||| |||||||||||    
T  46196732 tttatacttactttttcattatcccaattatgcctttaaacaacttattctataataaagattgttgttgatatcattaaaa 46196813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 365 - 484
Target Start/End: Original strand, 4798 - 4915
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagat 464  Q
    |||||||||| |||||||||||||||||||| |||| ||||||||||        |||||||||||  |||||||| ||| |||||||||    ||||||    
T  4798 tatatttatacttactttttcattatcccaattatacatttaaacaattttttctataataaagattgttgttggtgtcaataaaaacaa---attagat 4894  T
Q  465 ta-tatattttttgttatatt 484  Q
    || ||| ||||||||||||||    
T  4895 tattattttttttgttatatt 4915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 484
Target Start/End: Complemental strand, 22535567 - 22535451
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagat 464  Q
    |||| |||||||||||||||||||||||||| |||||  ||||||||        |||||||||||  || ||||| ||||||| || |||| |||||||    
T  22535567 tatacttatatttactttttcattatcccaattatatccttaaacaatttattctataataaagattgtttttggtgtcattaagaaaaagaatttagat 22535468  T
Q  465 tatatattttttgttatatt 484  Q
    |||   ||||||||||||||    
T  22535467 tat---ttttttgttatatt 22535451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 420 - 484
Target Start/End: Complemental strand, 12169938 - 12169872
Alignment:
Q  420 ataataaagatcattgttggtatcattaaaaaca--agattttagattatatattttttgttatatt 484  Q
    |||||||||||| |||||||| |||||||||| |  ||| |||||||||||| ||||||||||||||    
T  12169938 ataataaagatcgttgttggtgtcattaaaaaaataagagtttagattatattttttttgttatatt 12169872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 365 - 484
Target Start/End: Complemental strand, 22535166 - 22535047
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcat-taaaaacaagattttaga 463  Q
    ||||||||||||||||||||||||||||||| | ||   |||||||||       |||||||| ||  |||||||| ||||  ||||| |||| ||||||    
T  22535166 tatatttatatttactttttcattatcccaattgtacccttaaacaactttttctataataaatattgttgttggtgtcataaaaaaaaaagaatttaga 22535067  T
Q  464 ttatatattttttgttatatt 484  Q
    |||||| ||||||||||||||    
T  22535066 ttatat-ttttttgttatatt 22535047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 476
Target Start/End: Original strand, 31861812 - 31861922
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagat 464  Q
    |||||||||| ||| |||||||| ||||||| ||||   |||||||||       |||||||||||| || ||||| |||||||||| |||| |||||||    
T  31861812 tatatttatacttattttttcatgatcccaattatacccttaaacaactttttctataataaagatcgtttttggtgtcattaaaaa-aagaatttagat 31861910  T
Q  465 tatatatttttt 476  Q
    ||||||| ||||    
T  31861911 tatatatatttt 31861922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 484
Target Start/End: Complemental strand, 28712089 - 28711975
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagat 464  Q
    |||||||||| |||||||||||||||| ||| ||||   |||||||||       |||||||||||  |||||||| |||||||||| ||    ||||||    
T  28712089 tatatttatacttactttttcattatctcaattatacccttaaacaactttttctataataaagattgttgttggtgtcattaaaaaaaa----ttagat 28711994  T
Q  465 tatatattttttgttatatt 484  Q
    ||||| ||||||||||||||    
T  28711993 tatat-ttttttgttatatt 28711975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 484
Target Start/End: Original strand, 17353074 - 17353188
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagat 464  Q
    |||||||||| ||||||||| |||||||||| |||| |||||| ||||       |||||||||||  |||||||| |||||||||| ||    ||||||    
T  17353074 tatatttatacttacttttttattatcccaattatacatttaa-caactttttctataataaagattgttgttggtgtcattaaaaaaaa---attagat 17353169  T
Q  465 tatatattttttgttatatt 484  Q
    |||||| |||||||||||||    
T  17353170 tatata-tttttgttatatt 17353188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 411
Target Start/End: Original strand, 12184840 - 12184886
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaa 411  Q
    |||||||||| |||||||||||||||| ||| ||||| |||||||||    
T  12184840 tatatttatacttactttttcattatctcaattatatctttaaacaa 12184886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 420 - 474
Target Start/End: Original strand, 20715856 - 20715910
Alignment:
Q  420 ataataaagatcattgttggtatcattaaaaacaagattttagattatatatttt 474  Q
    |||||||||||  |||||||| |||||||||| |||| |||||||||||| ||||    
T  20715856 ataataaagattgttgttggtgtcattaaaaaaaagaatttagattatatttttt 20715910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 451
Target Start/End: Original strand, 14965202 - 14965288
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaa 451  Q
    |||||||||| ||||||||| ||||||||||  |||  ||||||||||       |||||||||||  |||||||| ||||||||||    
T  14965202 tatatttatacttacttttttattatcccaatcatacctttaaacaactttttctataataaagatggttgttggtgtcattaaaaa 14965288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 484
Target Start/End: Original strand, 2441461 - 2441508
Alignment:
Q  436 ttggtatcattaaaaacaagattttagattatatattttttgttatatt 484  Q
    ||||| |||||||||| |||| |||||||||||| ||||||||||||||    
T  2441461 ttggtgtcattaaaaa-aagaatttagattatattttttttgttatatt 2441508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 469
Target Start/End: Complemental strand, 34210153 - 34210064
Alignment:
Q  380 tttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaacaagattttagattatat 469  Q
    |||||||||||||||| ||||| ||||||||||       ||||||||| |  |||||||| ||| |||||| || | ||||||||||||    
T  34210153 tttttcattatcccaattatatctttaaacaactttttctataataaaggttgttgttggtctcaataaaaataataatttagattatat 34210064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 400
Target Start/End: Complemental strand, 8298 - 8263
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatata 400  Q
    ||||||||||||||||||||||||||||||| ||||    
T  8298 tatatttatatttactttttcattatcccaattata 8263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 400
Target Start/End: Complemental strand, 57710 - 57675
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatata 400  Q
    ||||||||||||||||||||||||||||||| ||||    
T  57710 tatatttatatttactttttcattatcccaattata 57675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 451
Target Start/End: Complemental strand, 12624 - 12538
Alignment:
Q  365 tatatttatatttactttttcattatcccaaatatatatttaaacaacnnnnnnnataataaagatcattgttggtatcattaaaaa 451  Q
    ||||||||||  |||||||||||||||| || |||| | |||||||||       |||||||||||  |||||| ||||||||||||    
T  12624 tatatttatacgtactttttcattatcctaattatacagttaaacaacttcttctataataaagattgttgttgatatcattaaaaa 12538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 484
Target Start/End: Complemental strand, 6971 - 6912
Alignment:
Q  424 taaagatcattgttggtatcattaaaaacaagattttagattatatattttttgttatatt 484  Q
    |||||||  |||||||  |||||||||| |||| |||||||||||| ||||||||||||||    
T  6971 taaagattgttgttggcgtcattaaaaa-aagaatttagattatattttttttgttatatt 6912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 400
Target Start/End: Complemental strand, 41652 - 41616
Alignment:
Q  364 ttatatttatatttactttttcattatcccaaatata 400  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  41652 ttatatttatacttactttttcattatcccaattata 41616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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