View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7555_low_1 (Length: 818)
Name: NF7555_low_1
Description: NF7555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7555_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 721; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 721; E-Value: 0
Query Start/End: Original strand, 11 - 801
Target Start/End: Original strand, 1855486 - 1856279
Alignment:
| Q |
11 |
ttattctacaggatgcttaacaagatgttatgattttgatactaaaatggtaattggaaataacactggaaagtgcacaggtttaggttgttgtgaagtt |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1855486 |
ttattctacaggatgcttaacaagatgttatgattttgatactaaaatggtaattggaaataacactggaaagtgcacaggtttaggttgttgtgaagtt |
1855585 |
T |
|
| Q |
111 |
gatattcctccacttatgaaaaatatcaccatagaagcatttaaattctcaccttctacactatctatggaaaattcttgtagctattcctttattgcaa |
210 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1855586 |
gatattcctccacttatgaaaaatatcaccatacaagcatttaaattctcaccttctacactatctatggaaaattcttgtagctattcctttattgcaa |
1855685 |
T |
|
| Q |
211 |
aacaaggatcctataatttttctgtagaacatatcaagaaactgccttataacactttccctatggttgttaattgggttgttacaaatgaatcatgtca |
310 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1855686 |
aacaaggatcctataatttttctgtagaacatattaagaaactgccttataacactttccctatggttgttaattgggttgttacaaatgaatcatgtcg |
1855785 |
T |
|
| Q |
311 |
aatagcccaaactacaaatagctatgcctgcaaggaaaatagcgaatgtgttgataaagattcagattatgacggttacagatgcaagtgtttggcaggt |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1855786 |
aatagcccaaactacaaatagctatgcctgcaaggaaaatagtgaatgtgttgataaagattcagattatgacggttacagatgcaagtgtttggcaggt |
1855885 |
T |
|
| Q |
411 |
tttgaaggaaatccatacgttcccggaggctgtagaggtaacaa--acatatcatgattgtaaatcacag-nnnnnnnnnncttttgtagtttaattaat |
507 |
Q |
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| T |
1855886 |
tttgaaggaaatccatacgttcccggaggctgtagaggtaacaagtacatatcatgattgtaaatcacagtttttctttttcttttgtagtttaattaat |
1855985 |
T |
|
| Q |
508 |
tgataatgcttcatatcttcaatgttttattgaatttggtttctcttaattatgtggctcgttttaaactagtgatttagtgattcatcgaagtgaattg |
607 |
Q |
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| T |
1855986 |
tgataatgcttcatatcttcaatgttttattgaatttggtttctcttaattatgtgactcgttttaaactagtgatttagtgattcatcgaagtgaattg |
1856085 |
T |
|
| Q |
608 |
ggattcatcaatgtattatgatgagaatcatacaaactagtgatttgaccggcaaacaaccatgctttttattgtctttcagacattaatgaatgtgcga |
707 |
Q |
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| T |
1856086 |
ggattcatcaatgtattatgatgagaatcatacaaactagtgatttgaccggcaaacaaccatgctttttattgtctttcagacattaatgaatgtgcga |
1856185 |
T |
|
| Q |
708 |
catcaaatcatacatgcctaagtgaagcaaattgtaataacactgttgggagttacaattgtttctgtccgaaatcgcaatttggaaatggaac |
801 |
Q |
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| T |
1856186 |
catcaaatcatacatgcctaagtgaagcaaattgtaataacactgttgggagttacaattgtttctgtccgaactcgcaatttggaaatggaac |
1856279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 11 - 558
Target Start/End: Complemental strand, 1817705 - 1817162
Alignment:
| Q |
11 |
ttattctacaggatgcttaacaagatgttatgattttgatactaaaatggtaattggaaataacactggaaagtgcacaggtttaggttgttgtgaagtt |
110 |
Q |
| |
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|||||| ||||| |||||||||||||||||||||||| | ||||||| |||||||| |||||||||||||| |||||||||||||| ||||| |||| |
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| T |
1817705 |
ttattcaacagggtgcttaacaagatgttatgattttaaacctaaaatagtaattgggaataacactggaaaatgcacaggtttagggtgttgccaagtg |
1817606 |
T |
|
| Q |
111 |
gatattcctccacttatgaaaaatatcaccatagaagcatttaaattctcaccttctacactatctatggaaaattcttgtagctattcctttattgcaa |
210 |
Q |
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||||||||| | ||||||||||||||| || ||||||||||||||| || ||||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
1817605 |
gatattccttctagtatgaaaaatatcacaattgaagcatttaaattcccaacttctaccctatctaaggaaaattcttgtagctattcctttattgcaa |
1817506 |
T |
|
| Q |
211 |
aacaaggatcctataatttttctgtagaacatatcaagaaactgccttataacactttccctatggttgttaattgggttgttacaaatgaatcatgtca |
310 |
Q |
| |
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|||||||||||||||| ||||||||||| ||||| || || || ||| || | |||||||| ||||| ||||||||| | ||||||||||||||||||| |
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| T |
1817505 |
aacaaggatcctataaattttctgtagaccatataaataatctacctaatgaaactttccccttggttattaattgggctattacaaatgaatcatgtca |
1817406 |
T |
|
| Q |
311 |
aatagcccaaactacaaatagctatgcctgcaaggaaaatagcgaatgtgttgataaagattcagattatgacggttacagatgcaagtgtttggcaggt |
410 |
Q |
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|||||| || |||||||||||||| ||||||||| ||||||| |||||||| ||| | ||| |||||||||| |||||||||||||||||||| |||| |
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| T |
1817405 |
aatagctcacactacaaatagctacgcctgcaagaaaaatagtgaatgtgtcgatgacgatccagattatgatggttacagatgcaagtgtttacaaggt |
1817306 |
T |
|
| Q |
411 |
tttgaaggaaatccatacgttcccggaggctgtagaggtaacaaacatatcatgattgtaaatcacagnnnnnnnnnncttttgtagtttaattaattga |
510 |
Q |
| |
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|||||||||||||||||| |||| |||||||| | |||||||||||| | ||| || | ||| | ||||| ||||||||||||||| |
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| T |
1817305 |
tttgaaggaaatccataccttcctggaggctgcacaggtaacaaacaaagcataatatcgtaccactgtttttgt----ttttgcagtttaattaattga |
1817210 |
T |
|
| Q |
511 |
taatgcttcatatcttcaatgttttattgaatttggtttctcttaatt |
558 |
Q |
| |
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| |||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
1817209 |
ttgtgcttcatattttcaatgttttattgaatttggttcctcttaatt |
1817162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 5e-49; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 27 - 215
Target Start/End: Original strand, 37566977 - 37567171
Alignment:
| Q |
27 |
ttaacaagatgttatgattttgatactaaaatggtaattggaaataacactggaaagtgcacagg------tttaggttgttgtgaagttgatattcctc |
120 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||| ||| |||||||||||||| |||||||| |||||| ||||| |||| ||||||||| |
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| T |
37566977 |
ttaacaagatgttatgattttgatcctaaaatggtaactgggaataacactggaaaatgcacaggcctaggtttagggtgttgccaagtggatattcctt |
37567076 |
T |
|
| Q |
121 |
cacttatgaaaaatatcaccatagaagcatttaaattctcaccttctacactatctatggaaaattcttgtagctattcctttattgcaaaacaa |
215 |
Q |
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| T |
37567077 |
ctagtatgaaaaatatcacaattgaaacatttaaattcccaacttctacactgtctatggaaaattcttgtagctattcctttattgcaaaacaa |
37567171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 661 - 715
Target Start/End: Original strand, 37567166 - 37567220
Alignment:
| Q |
661 |
aaacaaccatgctttttattgtctttcagacattaatgaatgtgcgacatcaaat |
715 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
37567166 |
aaacaaccatgctttttattgtctttcagacattaacgaatgtgtgacatcaaat |
37567220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 735 - 776
Target Start/End: Original strand, 37567216 - 37567257
Alignment:
| Q |
735 |
caaattgtaataacactgttgggagttacaattgtttctgtc |
776 |
Q |
| |
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| T |
37567216 |
caaattgtaataacactgttgggaattacaattgtttctgtc |
37567257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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