View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7556_low_1 (Length: 738)
Name: NF7556_low_1
Description: NF7556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7556_low_1 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 618; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 7 - 720
Target Start/End: Original strand, 29503583 - 29504296
Alignment:
| Q |
7 |
tggtggtgctacttttggatttcttgatattggattgatccctttttacagctggttttacacttttgagacttatggcaacttcatatttgaacttgag |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| | ||| |
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|
| T |
29503583 |
tggtggtgctacttttggatttcttgatattggtttgatccctttttacagctggttttacacttttgaaacttatggcaacttcaaatttgaagtggag |
29503682 |
T |
|
| Q |
107 |
tgtcctaaactcttggcttgggtcaagcgaagcatggtgaaagagagtgtttcaataatacttcctgatgagaagaaggtttatgattatgttgtgagca |
206 |
Q |
| |
|
|||||||||||| |||||||||||||| || |||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29503683 |
tgtcctaaactcatggcttgggtcaagagatgcatggagaaagagagtgtttcaaaaacacttcctgatgagaagaaggtttatgattatgttgtgagca |
29503782 |
T |
|
| Q |
207 |
tgaagaaagcacttggctttgattaaatatgatattgtaataagtttttctgtacttttctcttgcatttgttttgttagctttgattactttataatgg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29503783 |
tgaagaaagcacttggctttgattaaatatgatattgtaataagtttttctgtacttttctcttgcatttgttttgttagctttgattactttataatgg |
29503882 |
T |
|
| Q |
307 |
ttctagacacttgagtgtgtctacggcataacatttagaaattggagggtgaatgttgttaaggaatgttgttttaagttgccaattttattcatattat |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
29503883 |
ttctagacacttgagtgtgtctacggcataacatttagaaattggagggtgaatgttgttaaggaatgttgttttaagttgccaattttgttcatattat |
29503982 |
T |
|
| Q |
407 |
agtgatgtaatgcattgattcatgcctatggtaaatgtaaatctgacgagggtgcgagacatgtttttgatgatttggttgttagagacgtggttacttg |
506 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| || |||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29503983 |
agtgatgtaatgcactgattcatgcctatggtaaatgtaaatttgttgagggtacgagacgtgtttttgatgatttggttgttagagacgtggttacttg |
29504082 |
T |
|
| Q |
507 |
aagcgcattgtcctcatgctatgttagctgtggatttccctgggaggctctggccatttttcgcgaagtgggatggaatggggtgaaactggattcgatg |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
29504083 |
aagcgcattgtcctcatgctatgttagctgtggatttccctgggaggctctggccatttctcgcaaaatgggatggaatggggtgaaactggattcgatg |
29504182 |
T |
|
| Q |
607 |
actgtgtctagtattttgcctgcgtgcttggatttgaaagatttgcaatcaggtaatgcaagttcatactggtttgttccctttttatagctgctaattg |
706 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
29504183 |
actgtgtctagtattttgcctgcgtgctcggatttgaaagatttgcaatcaggtaatgcaagttcatactggtttgatccctttttatagctgctaactg |
29504282 |
T |
|
| Q |
707 |
tatagtgttctgtc |
720 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
29504283 |
tatagtgttctgtc |
29504296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 415 - 662
Target Start/End: Complemental strand, 34637386 - 34637139
Alignment:
| Q |
415 |
aatgcattgattcatgcctatggtaaatgtaaatctgacgagggtgcgagacatgtttttgatgatttggttgttagagacgtggttacttgaagcgcat |
514 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| | ||||||| |||| ||||||||||||| ||||||||||||| |||||| |||||| | | | |
|
|
| T |
34637386 |
aatgcattgattcatgcatatggtaaatgtaaatgcgttgagggtgaaagacgtgtttttgatgatatggttgttagagatgtggtttcttgaacctcgt |
34637287 |
T |
|
| Q |
515 |
tgtcctcatgctatgttagctgtggatttccctgggaggctctggccatttttcgcgaagtgggatggaatggggtgaaactggattcgatgactgtgtc |
614 |
Q |
| |
|
||||||| |||||||| ||||||||||| | ||| ||| |||||| ||| ||||||||||||||||||| |||||| | |||||||||| |
|
|
| T |
34637286 |
tgtcctcgtgctatgtcgattgtggatttcctcagaagggtctaaatgtttttcatgaaatgggatggaatggggtgaagctggatccagtgactgtgtc |
34637187 |
T |
|
| Q |
615 |
tagtattttgcctgcgtgcttggatttgaaagatttgcaatcaggtaa |
662 |
Q |
| |
|
||| || |||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
34637186 |
tagcatcttgcctgcgtgcgccgatttgaaagatttgaaatcaggtaa |
34637139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 8 - 231
Target Start/End: Original strand, 29491656 - 29491879
Alignment:
| Q |
8 |
ggtggtgctacttttggatttcttgatattggattgatccctttttacagctggttttacacttttgagacttatggcaacttcatatttgaacttgagt |
107 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||| ||| ||| || ||||| ||||| | | | ||| | |||| |
|
|
| T |
29491656 |
ggtggtgctacttttggctttcttgacattggtttgatccctttttacagctggttttatgcttatgaaacatatggtaactttaaaatggaagtggagt |
29491755 |
T |
|
| Q |
108 |
gtcctaaactcttggcttgggtcaagcgaagcatggtgaaagagagtgtttcaataatacttcctgatgagaagaaggtttatgattatgttgtgagcat |
207 |
Q |
| |
|
||||||| || |||| |||| |||| || | ||| |||||| |||||||||| || ||||||||| | | |||||| ||||||| |||||||||||| |
|
|
| T |
29491756 |
gtcctaagcttatggcatgggccaagagatgtttggagaaagaaagtgtttcaaaaactcttcctgatcaaatgaaggtgtatgattttgttgtgagcat |
29491855 |
T |
|
| Q |
208 |
gaagaaagcacttggctttgatta |
231 |
Q |
| |
|
||||||| ||||||| || ||||| |
|
|
| T |
29491856 |
gaagaaatcacttggtttggatta |
29491879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 7 - 231
Target Start/End: Original strand, 29489129 - 29489353
Alignment:
| Q |
7 |
tggtggtgctacttttggatttcttgatattggattgatccctttttacagctggttttacacttttgagacttatggcaacttcatatttgaacttgag |
106 |
Q |
| |
|
|||||||| || ||||| |||||||||||||| ||||||||||||| |||||||| || | |||||||| ||||||||||||| | | ||| || |
|
|
| T |
29489129 |
tggtggtgacacatttgggtttcttgatattggtctgatccctttttatagctggttctatgcatttgagacatatggcaacttcaaaatggaaacggaa |
29489228 |
T |
|
| Q |
107 |
tgtcctaaactcttggcttgggtcaagcgaagcatggtgaaagagagtgtttcaataatacttcctgatgagaagaaggtttatgattatgttgtgagca |
206 |
Q |
| |
|
||||||||||| |||||||| |||| || |||||| ||||| ||||| |||| | ||||||||| |||||||||| ||||||| ||||||||||| |
|
|
| T |
29489229 |
tgtcctaaactaatggcttggaccaagagatgcatggaaaaagatagtgtgtcaaaatctcttcctgatcagaagaaggtgtatgattttgttgtgagca |
29489328 |
T |
|
| Q |
207 |
tgaagaaagcacttggctttgatta |
231 |
Q |
| |
|
| |||||||||||||| || ||||| |
|
|
| T |
29489329 |
ttaagaaagcacttggattggatta |
29489353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 415 - 595
Target Start/End: Original strand, 33899399 - 33899587
Alignment:
| Q |
415 |
aatgcattgattcatgcctatggtaaatgtaaatctgacgagggtgcgagacatgtttttgatgatttggttgttagagacgtggttacttgaagcgcat |
514 |
Q |
| |
|
||||||||||||||||| | ||| |||||||||| | |||||||||||| ||||||||||||||||||||||| |||| ||||||||||| | | ||| |
|
|
| T |
33899399 |
aatgcattgattcatgcttgtggcaaatgtaaatgcgttgagggtgcgagatatgtttttgatgatttggttgtttgagatgtggttacttggaactcat |
33899498 |
T |
|
| Q |
515 |
tg--------tcctcatgctatgttagctgtggatttccctgggaggctctggccatttttcgcgaagtgggatggaatggggtgaaac |
595 |
Q |
| |
|
|| ||||| || ||||||| || |||||||||| || ||| |||| ||||||||| || ||||||||||| ||||||||| |
|
|
| T |
33899499 |
tgtccttgactcctcgtgatatgttaactatggatttccccggcagggtctgaatatttttcgcaaaatgggatggaatcgggtgaaac |
33899587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 423 - 505
Target Start/End: Complemental strand, 29056689 - 29056607
Alignment:
| Q |
423 |
gattcatgcctatggtaaatgtaaatctgacgagggtgcgagacatgtttttgatgatttggttgttagagacgtggttactt |
505 |
Q |
| |
|
||||||| | |||||||||||||||| | ||||||| ||| |||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
29056689 |
gattcatacttatggtaaatgtaaatgcgttgagggtggcagatttgtttttgatgatttgcttgttagagatgtggttactt |
29056607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 609 - 662
Target Start/End: Complemental strand, 29056502 - 29056449
Alignment:
| Q |
609 |
tgtgtctagtattttgcctgcgtgcttggatttgaaagatttgcaatcaggtaa |
662 |
Q |
| |
|
||||||||| || |||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
29056502 |
tgtgtctagcatcatgcctgggtgctcggatttgaaagatttgcaatcaggtaa |
29056449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 582 - 662
Target Start/End: Complemental strand, 29055960 - 29055880
Alignment:
| Q |
582 |
gaatggggtgaaactggattcgatgactgtgtctagtattttgcctgcgtgcttggatttgaaagatttgcaatcaggtaa |
662 |
Q |
| |
|
|||||||||||||||| | || ||||| || |||||||||||||| ||||| ||||||| |||||||| ||| |||||| |
|
|
| T |
29055960 |
gaatggggtgaaactgaacccggtgactatgcttagtattttgcctgtgtgctcggatttgcaagatttgaaattaggtaa |
29055880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 9e-35; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 415 - 662
Target Start/End: Complemental strand, 13794892 - 13794645
Alignment:
| Q |
415 |
aatgcattgattcatgcctatggtaaatgtaaatctgacgagggtgcgagacatgtttttgatgatttggttgttagagacgtggttacttgaagcgcat |
514 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||| |||||| ||||||||||| | ||| |
|
|
| T |
13794892 |
aatgcattcattcatgcctatggtaaatgtaaatgtgttgagggtgcgagacgtgtttttgatgatttggttgctagagatgtggttacttggaattcat |
13794793 |
T |
|
| Q |
515 |
tgtcctcatgctatgttagctgtggatttccctgggaggctctggccatttttcgcgaagtgggatggaatggggtgaaactggattcgatgactgtgtc |
614 |
Q |
| |
|
||||| | |||||||||| ||||||||||| | | | ||| |||||||| || |||||| |||| ||||||| | || || |||||||||| |
|
|
| T |
13794792 |
tgtccgcctgctatgttaattgtggatttcctcagcaaggtcttaatgtttttcgcaaaatgggattgaataaggtgaaagcgaatccgttgactgtgtc |
13794693 |
T |
|
| Q |
615 |
tagtattttgcctgcgtgcttggatttgaaagatttgcaatcaggtaa |
662 |
Q |
| |
|
|||||||||||| | ||||| ||||| |||||||| |||||||||| |
|
|
| T |
13794692 |
tagtattttgccagggtgctcagatttacaagatttgaaatcaggtaa |
13794645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 415 - 662
Target Start/End: Original strand, 28742259 - 28742506
Alignment:
| Q |
415 |
aatgcattgattcatgcctatggtaaatgtaaatctgacgagggtgcgagacatgtttttgatgatttggttgttagagacgtggttacttgaagcgcat |
514 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||| ||||||| ||| | | | | |
|
|
| T |
28742259 |
aatgcgttgattcatgcttatggtaaatgtaaatgtgttgagggtgcgagacgtgtttttgatgatttggttgttagagatgtggttagttggacctcgt |
28742358 |
T |
|
| Q |
515 |
tgtcctcatgctatgttagctgtggatttccctgggaggctctggccatttttcgcgaagtgggatggaatggggtgaaactggattcgatgactgtgtc |
614 |
Q |
| |
|
|||| || || ||||||| ||||||||||| || ||| ||| ||||||| ||| |||| |||| ||||||||| | | || |||||||||| || |
|
|
| T |
28742359 |
tgtcgtcgtgttatgttaagtgtggatttcctcggaagggcatggatgtttttcgtgaaatggggtggagtggggtgaagccgaatccgatgactgtttc |
28742458 |
T |
|
| Q |
615 |
tagtattttgcctgcgtgcttggatttgaaagatttgcaatcaggtaa |
662 |
Q |
| |
|
||| ||||||||||| || ||| |||||||||||| |||| ||||| |
|
|
| T |
28742459 |
tagcattttgcctgcttgtgcggaattgaaagatttgaaatcgggtaa |
28742506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 489 - 667
Target Start/End: Complemental strand, 13794515 - 13794337
Alignment:
| Q |
489 |
tagagacgtggttacttgaagcgcattgtcctcatgctatgttagctgtggatttccctgggaggctctggccatttttcgcgaagtgggatggaatggg |
588 |
Q |
| |
|
|||||| ||||||||||| | | | |||||||| |||||||| | ||||||||||| | ||| |||| ||||||||||| ||| || | ||||| |
|
|
| T |
13794515 |
tagagatgtggttacttggaactcgttgtcctcgtgctatgtcaattgtggatttcctcagaagggtctgaatgtttttcgcgaaatggtattggatggg |
13794416 |
T |
|
| Q |
589 |
gtgaaactggattcgatgactgtgtctagtattttgcctgcgtgcttggatttgaaagatttgcaatcaggtaatgcaa |
667 |
Q |
| |
|
||||| | |||| || ||||||||||| | |||||| ||||||||| |||||| | |||||| |||||||||| |||| |
|
|
| T |
13794415 |
gtgaagccggatccggtgactgtgtcttgcattttgtctgcgtgctcagatttgcaggatttgaaatcaggtaaagcaa |
13794337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 563 - 662
Target Start/End: Complemental strand, 13793835 - 13793736
Alignment:
| Q |
563 |
tttttcgcgaagtgggatggaatggggtgaaactggattcgatgactgtgtctagtattttgcctgcgtgcttggatttgaaagatttgcaatcaggtaa |
662 |
Q |
| |
|
||||||||||| ||| || ||||||||| |||| |||| | ||||| || ||||||||||| ||| |||| |||||| |||||||| |||||||||| |
|
|
| T |
13793835 |
tttttcgcgaaatggtattgaatggggttaaaccggatctggtgactatgcttagtattttgcatgcatgctcagatttgcaagatttgaaatcaggtaa |
13793736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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