View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7556_low_2 (Length: 488)

Name: NF7556_low_2
Description: NF7556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7556_low_2
NF7556_low_2
[»] chr7 (20 HSPs)
chr7 (18-193)||(8676430-8676615)
chr7 (399-467)||(38224535-38224602)
chr7 (399-470)||(41406135-41406205)
chr7 (398-470)||(43544978-43545049)
chr7 (408-470)||(1602208-1602269)
chr7 (408-470)||(37708173-37708234)
chr7 (409-470)||(42825812-42825872)
chr7 (409-470)||(47252174-47252234)
chr7 (398-470)||(33982397-33982468)
chr7 (398-441)||(596216-596259)
chr7 (398-443)||(38229613-38229658)
chr7 (398-443)||(41408002-41408047)
chr7 (398-470)||(42833806-42833877)
chr7 (398-441)||(33979562-33979605)
chr7 (398-441)||(43543184-43543227)
chr7 (398-441)||(47254587-47254630)
chr7 (408-442)||(19064124-19064158)
chr7 (407-441)||(46160605-46160639)
chr7 (411-470)||(585972-586028)
chr7 (408-441)||(1599614-1599647)
[»] chr5 (12 HSPs)
chr5 (398-470)||(8520443-8520514)
chr5 (398-443)||(29390802-29390847)
chr5 (398-443)||(37250366-37250411)
chr5 (398-470)||(37256191-37256262)
chr5 (398-441)||(5100425-5100468)
chr5 (409-470)||(5102785-5102846)
chr5 (409-443)||(29640292-29640326)
chr5 (398-443)||(3033265-3033310)
chr5 (408-441)||(8525633-8525666)
chr5 (398-443)||(29639520-29639565)
chr5 (398-443)||(34858466-34858511)
chr5 (409-441)||(29389182-29389214)
[»] chr4 (24 HSPs)
chr4 (398-470)||(43590480-43590551)
chr4 (409-470)||(10658965-10659025)
chr4 (409-470)||(10873110-10873170)
chr4 (407-470)||(43940183-43940245)
chr4 (398-468)||(48952976-48953045)
chr4 (409-466)||(24577722-24577778)
chr4 (401-470)||(31624480-31624548)
chr4 (398-442)||(7113698-7113742)
chr4 (398-442)||(40846629-40846673)
chr4 (400-443)||(31623365-31623408)
chr4 (408-470)||(14269905-14269966)
chr4 (412-470)||(19871055-19871112)
chr4 (408-470)||(50792498-50792559)
chr4 (409-470)||(19869917-19869977)
chr4 (398-443)||(43594116-43594161)
chr4 (401-441)||(7111745-7111785)
chr4 (398-466)||(26923625-26923692)
chr4 (398-470)||(50790770-50790841)
chr4 (412-443)||(8081034-8081065)
chr4 (408-443)||(30112863-30112898)
chr4 (412-470)||(49645985-49646042)
chr4 (408-441)||(26918329-26918362)
chr4 (398-443)||(47650671-47650716)
chr4 (409-470)||(51941060-51941120)
[»] chr3 (17 HSPs)
chr3 (398-470)||(41889503-41889574)
chr3 (398-470)||(42167414-42167485)
chr3 (398-470)||(42877186-42877257)
chr3 (408-470)||(2229252-2229313)
chr3 (408-470)||(50938319-50938380)
chr3 (398-443)||(43862434-43862479)
chr3 (398-470)||(48071922-48071993)
chr3 (408-467)||(43359367-43359425)
chr3 (408-470)||(39129256-39129317)
chr3 (408-470)||(41888765-41888826)
chr3 (408-470)||(43860682-43860743)
chr3 (398-443)||(22978024-22978069)
chr3 (398-441)||(39131797-39131840)
chr3 (408-443)||(42164161-42164196)
chr3 (398-441)||(42879560-42879603)
chr3 (409-470)||(50935670-50935730)
chr3 (399-443)||(48073778-48073822)
[»] chr1 (10 HSPs)
chr1 (398-470)||(4640175-4640246)
chr1 (398-470)||(23259031-23259102)
chr1 (408-470)||(43847511-43847572)
chr1 (408-470)||(44300026-44300087)
chr1 (398-455)||(44110029-44110085)
chr1 (409-470)||(11756954-11757014)
chr1 (398-441)||(23260881-23260924)
chr1 (413-470)||(4638354-4638410)
chr1 (409-470)||(42159569-42159629)
chr1 (398-454)||(44299264-44299319)
[»] chr6 (6 HSPs)
chr6 (408-470)||(24159194-24159255)
chr6 (398-470)||(5090166-5090237)
chr6 (398-466)||(13866210-13866277)
chr6 (398-469)||(34574678-34574748)
chr6 (408-470)||(15508305-15508366)
chr6 (412-470)||(32562493-32562550)
[»] chr2 (17 HSPs)
chr2 (408-470)||(14454444-14454505)
chr2 (398-470)||(24520300-24520371)
chr2 (398-470)||(33182651-33182722)
chr2 (398-466)||(6319483-6319550)
chr2 (398-470)||(6322222-6322293)
chr2 (398-470)||(18246637-18246708)
chr2 (61-116)||(25732402-25732456)
chr2 (408-470)||(33178917-33178978)
chr2 (408-470)||(14452257-14452317)
chr2 (408-470)||(36600893-36600954)
chr2 (398-443)||(18248489-18248534)
chr2 (398-443)||(27478962-27479007)
chr2 (408-443)||(39160052-39160087)
chr2 (408-443)||(39209107-39209142)
chr2 (412-466)||(36602818-36602871)
chr2 (409-443)||(38932346-38932380)
chr2 (398-442)||(21191670-21191714)
[»] scaffold0014 (2 HSPs)
scaffold0014 (398-465)||(71639-71705)
scaffold0014 (408-441)||(69686-69719)
[»] chr8 (11 HSPs)
chr8 (408-470)||(31642831-31642892)
chr8 (398-470)||(15825718-15825789)
chr8 (408-470)||(19143004-19143065)
chr8 (398-455)||(35019433-35019489)
chr8 (409-470)||(23625866-23625926)
chr8 (401-441)||(29725690-29725730)
chr8 (398-470)||(43129536-43129607)
chr8 (398-436)||(26951129-26951167)
chr8 (398-443)||(23625962-23626007)
chr8 (398-443)||(31640303-31640348)
chr8 (398-443)||(39069028-39069073)
[»] scaffold0009 (1 HSPs)
scaffold0009 (398-470)||(94486-94557)
[»] scaffold0217 (1 HSPs)
scaffold0217 (398-443)||(896-941)


Alignment Details
Target: chr7 (Bit Score: 143; Significance: 6e-75; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 8676615 - 8676430
Alignment:
Q  18 gttacgtattcagatcttcaaattttggaatgcgttgaaaagcaatagttgaacgatgaagaagaagtagagagaaaagttacctgagttgagaagcgag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8676615 gttacgtattcagatcttcaaattttggaatgcgttgaaaagcaatagttgaacgatgaagaagaagtagagagaaaagttacctgagttgagaagcgag 8676516  T
Q  118 taactccggctgcgttttccggcggtt----------ttgagttttatttttcaagtgctattccatgtttttgtgaatgaatcat 193  Q
    |||||||||||||||||||||||||||           |||||||||||||||||||||| |||||||||||||||||||||||||    
T  8676515 taactccggctgcgttttccggcggttaagttcagtgctgagttttatttttcaagtgctgttccatgtttttgtgaatgaatcat 8676430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 399 - 467
Target Start/End: Original strand, 38224535 - 38224602
Alignment:
Q  399 actatagaacttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacac 467  Q
    ||||||| |||||||||||||||||||| ||||||||||||| |||||||||| ||| |||||||||||    
T  38224535 actataggacttgtaacaattaaaatttcacatcaaattcaa-cccatcatggctgtgtttggtaacac 38224602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 399 - 470
Target Start/End: Original strand, 41406135 - 41406205
Alignment:
Q  399 actatagaacttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    |||||||  ||||||||||||||||||| ||||||||||||| |||||||||| ||| ||||||||||||||    
T  41406135 actatagggcttgtaacaattaaaatttcacatcaaattcaa-cccatcatggctgtgtttggtaacacgaa 41406205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 398 - 470
Target Start/End: Complemental strand, 43545049 - 43544978
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    ||||||||  ||| ||||||||||||||| ||||||||||||| |||||||||| ||| ||||||||||||||    
T  43545049 cactatagggcttttaacaattaaaatttcacatcaaattcaa-cccatcatggttgtgtttggtaacacgaa 43544978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 408 - 470
Target Start/End: Complemental strand, 1602269 - 1602208
Alignment:
Q  408 cttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    ||||||||||||||||||||||||||||||||| ||||||||||  || |||| |||||||||    
T  1602269 cttgtaacaattaaaattttacatcaaattcaa-cccatcatggcagtgtttgataacacgaa 1602208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 408 - 470
Target Start/End: Complemental strand, 37708234 - 37708173
Alignment:
Q  408 cttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    ||||||||||||||||||| ||||||||||||| |||||||||| ||| ||| ||||||||||    
T  37708234 cttgtaacaattaaaatttcacatcaaattcaa-cccatcatggctgtgtttcgtaacacgaa 37708173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 409 - 470
Target Start/End: Original strand, 42825812 - 42825872
Alignment:
Q  409 ttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    |||||||||||||||||| ||||||||||| | |||||||||| ||| ||||||||||||||    
T  42825812 ttgtaacaattaaaatttcacatcaaattcca-cccatcatggttgtgtttggtaacacgaa 42825872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 409 - 470
Target Start/End: Original strand, 47252174 - 47252234
Alignment:
Q  409 ttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    |||||||||||||||||| ||||||||||| | ||||||||| |||| ||||||||||||||    
T  47252174 ttgtaacaattaaaatttcacatcaaattcta-cccatcatgaatgtgtttggtaacacgaa 47252234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 470
Target Start/End: Complemental strand, 33982468 - 33982397
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    |||||||| ||||||||||||||| |||| ||||||||||||| | |||||||| ||| |||||| |||||||    
T  33982468 cactataggacttgtaacaattaacatttcacatcaaattcaa-cacatcatggttgtgtttggtgacacgaa 33982397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 398 - 441
Target Start/End: Complemental strand, 596259 - 596216
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaac 441  Q
    |||||||| |||||||||||||||||||| ||||||||||||||    
T  596259 cactataggacttgtaacaattaaaatttcacatcaaattcaac 596216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 398 - 443
Target Start/End: Complemental strand, 38229658 - 38229613
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 443  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||||    
T  38229658 cactatagggcttgtaacaattaaaatttcacatcaaattcaaccc 38229613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 398 - 443
Target Start/End: Complemental strand, 41408047 - 41408002
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 443  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||||    
T  41408047 cactatagggcttgtaacaattaaaatttcacatcaaattcaaccc 41408002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 470
Target Start/End: Complemental strand, 42833877 - 42833806
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    ||||||||  |||| |||||||||||||| |||||||||| || |||||||||| ||| |||||||| |||||    
T  42833877 cactatagggcttgaaacaattaaaatttcacatcaaatttaa-cccatcatggctgtgtttggtaatacgaa 42833806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 441
Target Start/End: Original strand, 33979562 - 33979605
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaac 441  Q
    ||||||| |||||| |||||||||||||| ||||||||||||||    
T  33979562 cactatataacttgcaacaattaaaatttcacatcaaattcaac 33979605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 441
Target Start/End: Original strand, 43543184 - 43543227
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaac 441  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||    
T  43543184 cactatagggcttgtaacaattaaaatttcacatcaaattcaac 43543227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 441
Target Start/End: Complemental strand, 47254630 - 47254587
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaac 441  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||    
T  47254630 cactataggtcttgtaacaattaaaatttcacatcaaattcaac 47254587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 408 - 442
Target Start/End: Original strand, 19064124 - 19064158
Alignment:
Q  408 cttgtaacaattaaaattttacatcaaattcaacc 442  Q
    ||||||||||||||||||| |||||||||||||||    
T  19064124 cttgtaacaattaaaatttcacatcaaattcaacc 19064158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 407 - 441
Target Start/End: Complemental strand, 46160639 - 46160605
Alignment:
Q  407 acttgtaacaattaaaattttacatcaaattcaac 441  Q
    |||||||||||||||||||| ||||||||||||||    
T  46160639 acttgtaacaattaaaatttcacatcaaattcaac 46160605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 470
Target Start/End: Complemental strand, 586028 - 585972
Alignment:
Q  411 gtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    |||||||||||||||| |||||||||||||||   |||||| ||| ||| ||||||||||    
T  586028 gtaacaattaaaatttcacatcaaattcaacc---tcatggttgtgtttagtaacacgaa 585972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 441
Target Start/End: Original strand, 1599614 - 1599647
Alignment:
Q  408 cttgtaacaattaaaattttacatcaaattcaac 441  Q
    ||||||||||||||||||| ||||||||||||||    
T  1599614 cttgtaacaattaaaatttcacatcaaattcaac 1599647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 398 - 470
Target Start/End: Original strand, 8520443 - 8520514
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    ||||||||  ||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||    
T  8520443 cactatagggcttgtaacaattaaaattttacatcaaattcaa-cccatcatggctgtgtttggtaacacgaa 8520514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 398 - 443
Target Start/End: Complemental strand, 29390847 - 29390802
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 443  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||||    
T  29390847 cactatagggcttgtaacaattaaaatttcacatcaaattcaaccc 29390802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 398 - 443
Target Start/End: Original strand, 37250366 - 37250411
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 443  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||||    
T  37250366 cactatagggcttgtaacaattaaaatttcacatcaaattcaaccc 37250411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 470
Target Start/End: Complemental strand, 37256262 - 37256191
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    ||||||||  ||||||||||||||||||| |||||||| |||| | |||||||| ||| |||||||| |||||    
T  37256262 cactatagggcttgtaacaattaaaatttgacatcaaactcaa-ctcatcatggctgtgtttggtaatacgaa 37256191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 441
Target Start/End: Original strand, 5100425 - 5100468
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaac 441  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||    
T  5100425 cactataggtcttgtaacaattaaaatttcacatcaaattcaac 5100468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 409 - 470
Target Start/End: Complemental strand, 5102846 - 5102785
Alignment:
Q  409 ttgtaacaattaaaatttt-acatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    ||||||||||||||||||| ||||||||||| | || ||||||| ||| ||||||||||||||    
T  5102846 ttgtaacaattaaaatttttacatcaaattctatcc-atcatggttgtgtttggtaacacgaa 5102785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 409 - 443
Target Start/End: Complemental strand, 29640326 - 29640292
Alignment:
Q  409 ttgtaacaattaaaattttacatcaaattcaaccc 443  Q
    |||||||||||||||||| ||||||||||||||||    
T  29640326 ttgtaacaattaaaatttcacatcaaattcaaccc 29640292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 443
Target Start/End: Original strand, 3033265 - 3033310
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 443  Q
    |||||||||  ||||||||| ||||||||||||||||||| |||||    
T  3033265 cactatagagtttgtaacaactaaaattttacatcaaatttaaccc 3033310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 441
Target Start/End: Complemental strand, 8525666 - 8525633
Alignment:
Q  408 cttgtaacaattaaaattttacatcaaattcaac 441  Q
    ||||||||||||||||||| ||||||||||||||    
T  8525666 cttgtaacaattaaaatttcacatcaaattcaac 8525633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 443
Target Start/End: Original strand, 29639520 - 29639565
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 443  Q
    ||||||||  ||||||||||||||| ||| ||||||||||||||||    
T  29639520 cactatagggcttgtaacaattaaagtttcacatcaaattcaaccc 29639565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 443
Target Start/End: Original strand, 34858466 - 34858511
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 443  Q
    ||||||||  ||||||||||||||||||| ||||||||||| ||||    
T  34858466 cactatagggcttgtaacaattaaaatttcacatcaaattccaccc 34858511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 441
Target Start/End: Original strand, 29389182 - 29389214
Alignment:
Q  409 ttgtaacaattaaaattttacatcaaattcaac 441  Q
    |||||||||||||||||| ||||||||||||||    
T  29389182 ttgtaacaattaaaatttcacatcaaattcaac 29389214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 398 - 470
Target Start/End: Original strand, 43590480 - 43590551
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    |||||||| |||||||||||||||||||| ||||||||||||| |||||||||| ||| ||||||||||||||    
T  43590480 cactataggacttgtaacaattaaaatttaacatcaaattcaa-cccatcatggctgtgtttggtaacacgaa 43590551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 409 - 470
Target Start/End: Complemental strand, 10659025 - 10658965
Alignment:
Q  409 ttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    |||||||||||||||||| ||||||||||||| |||||||||| ||| ||||||||||||||    
T  10659025 ttgtaacaattaaaatttcacatcaaattcaa-cccatcatggctgtgtttggtaacacgaa 10658965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 409 - 470
Target Start/End: Complemental strand, 10873170 - 10873110
Alignment:
Q  409 ttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    |||||||||||||||||| ||||||||||||| |||||||||| ||| ||||||||||||||    
T  10873170 ttgtaacaattaaaatttcacatcaaattcaa-cccatcatggctgtgtttggtaacacgaa 10873110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 407 - 470
Target Start/End: Complemental strand, 43940245 - 43940183
Alignment:
Q  407 acttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    |||| ||||||||||||||| |||||| ||||||||| ||||||||||| ||||||||||||||    
T  43940245 acttctaacaattaaaatttcacatcatattcaaccc-atcatggatgtgtttggtaacacgaa 43940183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 398 - 468
Target Start/End: Original strand, 48952976 - 48953045
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacg 468  Q
    ||||||||  ||||||||||||||||||| |||||||||||||  ||||||||| ||| ||||||||||||    
T  48952976 cactatagggcttgtaacaattaaaatttcacatcaaattcaa-tccatcatggttgtgtttggtaacacg 48953045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 409 - 466
Target Start/End: Complemental strand, 24577778 - 24577722
Alignment:
Q  409 ttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaaca 466  Q
    |||||||||||||||||| ||||||||||||| |||||||||| ||| ||||||||||    
T  24577778 ttgtaacaattaaaatttcacatcaaattcaa-cccatcatggctgtgtttggtaaca 24577722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 401 - 470
Target Start/End: Complemental strand, 31624548 - 31624480
Alignment:
Q  401 tatagaacttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    ||||| |||||||||||||||||||| ||||||||||||| | |||||||| | | ||||||||||||||    
T  31624548 tataggacttgtaacaattaaaatttcacatcaaattcaa-cacatcatggctatgtttggtaacacgaa 31624480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 442
Target Start/End: Complemental strand, 7113742 - 7113698
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaacc 442  Q
    |||||||| || |||||||||||||||||||||||||||||||||    
T  7113742 cactataggacatgtaacaattaaaattttacatcaaattcaacc 7113698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 442
Target Start/End: Complemental strand, 40846673 - 40846629
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaacc 442  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||    
T  40846673 cactatagagcttgtaacaattaaaatttcacatcaaattcaacc 40846629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 400 - 443
Target Start/End: Original strand, 31623365 - 31623408
Alignment:
Q  400 ctatagaacttgtaacaattaaaattttacatcaaattcaaccc 443  Q
    |||||| |||||||||||||||||||| ||||||||||||||||    
T  31623365 ctataggacttgtaacaattaaaatttcacatcaaattcaaccc 31623408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 470
Target Start/End: Complemental strand, 14269966 - 14269905
Alignment:
Q  408 cttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    ||||||||||||||||||| || |||||||| | |||||||||| ||| ||||||||||||||    
T  14269966 cttgtaacaattaaaatttcacctcaaattcga-cccatcatggctgtgtttggtaacacgaa 14269905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 412 - 470
Target Start/End: Complemental strand, 19871112 - 19871055
Alignment:
Q  412 taacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    ||||||||||||||| ||||||||||||| |||||||||  ||| ||||||||||||||    
T  19871112 taacaattaaaatttcacatcaaattcaa-cccatcatgactgtgtttggtaacacgaa 19871055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 470
Target Start/End: Complemental strand, 50792559 - 50792498
Alignment:
Q  408 cttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    ||||||||||||||||||| |||||||||| || | |||||||| ||| ||||||||||||||    
T  50792559 cttgtaacaattaaaatttcacatcaaatt-aaactcatcatggctgtgtttggtaacacgaa 50792498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 409 - 470
Target Start/End: Original strand, 19869917 - 19869977
Alignment:
Q  409 ttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    ||||||||| |||||||| |||||||||||||  ||||||||| ||| ||||||||||||||    
T  19869917 ttgtaacaactaaaatttcacatcaaattcaa-tccatcatggctgtgtttggtaacacgaa 19869977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 398 - 443
Target Start/End: Complemental strand, 43594161 - 43594116
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 443  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||||    
T  43594161 cactatagggcttgtaacaattaaaatttcacatcaaattcaaccc 43594116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 441
Target Start/End: Original strand, 7111745 - 7111785
Alignment:
Q  401 tatagaacttgtaacaattaaaattttacatcaaattcaac 441  Q
    |||||| ||||||||||||||||||| ||||||||||||||    
T  7111745 tatagagcttgtaacaattaaaatttcacatcaaattcaac 7111785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 466
Target Start/End: Complemental strand, 26923692 - 26923625
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaaca 466  Q
    ||||||||  ||||||| ||||||||||||| ||||||||||| |||||||||  ||| ||||||||||    
T  26923692 cactatagggcttgtaagaattaaaattttatatcaaattcaa-cccatcatgagtgtgtttggtaaca 26923625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 470
Target Start/End: Original strand, 50790770 - 50790841
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    ||||||||  |||| |||||||||||||| ||||||||||||| | ||||||| || | ||||||||||||||    
T  50790770 cactatagggcttgcaacaattaaaatttcacatcaaattcaa-cacatcatgaatatgtttggtaacacgaa 50790841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 443
Target Start/End: Complemental strand, 8081065 - 8081034
Alignment:
Q  412 taacaattaaaattttacatcaaattcaaccc 443  Q
    ||||||||||||||||||||||||||||||||    
T  8081065 taacaattaaaattttacatcaaattcaaccc 8081034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 443
Target Start/End: Original strand, 30112863 - 30112898
Alignment:
Q  408 cttgtaacaattaaaattttacatcaaattcaaccc 443  Q
    ||||||||||||||||||| ||||||||||||||||    
T  30112863 cttgtaacaattaaaatttcacatcaaattcaaccc 30112898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 470
Target Start/End: Original strand, 49645985 - 49646042
Alignment:
Q  412 taacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    ||||||||||||||| ||||||||||||| | |||||||| | | ||||||||||||||    
T  49645985 taacaattaaaatttcacatcaaattcaa-ctcatcatggctatgtttggtaacacgaa 49646042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 441
Target Start/End: Original strand, 26918329 - 26918362
Alignment:
Q  408 cttgtaacaattaaaattttacatcaaattcaac 441  Q
    ||||||||||||||||||| ||||||||||||||    
T  26918329 cttgtaacaattaaaatttcacatcaaattcaac 26918362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 443
Target Start/End: Complemental strand, 47650716 - 47650671
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 443  Q
    ||||||||  ||||||||||||||||||| |||||||||| |||||    
T  47650716 cactataggtcttgtaacaattaaaatttcacatcaaatttaaccc 47650671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 470
Target Start/End: Original strand, 51941060 - 51941120
Alignment:
Q  409 ttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    |||||||||||||||||| ||||||||||| | | |||||||| ||| ||| ||||||||||    
T  51941060 ttgtaacaattaaaatttcacatcaaattcta-ctcatcatggttgtgtttagtaacacgaa 51941120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 398 - 470
Target Start/End: Complemental strand, 41889574 - 41889503
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    ||||||||  ||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||    
T  41889574 cactatagggcttgtaacaattaaaatttcacatcaaattcaa-cccatcatggatgtgtttggtaacacgaa 41889503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 398 - 470
Target Start/End: Complemental strand, 42167485 - 42167414
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    ||||||||  ||||||||||||||||||| ||||||||||||| |||||||||| ||| ||||||||||||||    
T  42167485 cactatagggcttgtaacaattaaaatttcacatcaaattcaa-cccatcatggttgtgtttggtaacacgaa 42167414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 398 - 470
Target Start/End: Original strand, 42877186 - 42877257
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    ||||||||  ||||||||||||||||||| ||||||||||||| |||||||||| ||| ||||||||||||||    
T  42877186 cactatagggcttgtaacaattaaaatttcacatcaaattcaa-cccatcatggctgtgtttggtaacacgaa 42877257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 408 - 470
Target Start/End: Complemental strand, 2229313 - 2229252
Alignment:
Q  408 cttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    ||||||||||||||||||| ||||||||||||| | |||||||| ||| ||||||||||||||    
T  2229313 cttgtaacaattaaaatttcacatcaaattcaa-ctcatcatggttgtgtttggtaacacgaa 2229252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 408 - 470
Target Start/End: Complemental strand, 50938380 - 50938319
Alignment:
Q  408 cttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    ||||||||||||||||||| ||||||||||||| |||||||||  ||| ||||||||||||||    
T  50938380 cttgtaacaattaaaatttcacatcaaattcaa-cccatcatgactgtgtttggtaacacgaa 50938319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 398 - 443
Target Start/End: Complemental strand, 43862479 - 43862434
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 443  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||    
T  43862479 cactatagagcttgtaacaattaaaatttcacatcaaattcaaccc 43862434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 470
Target Start/End: Original strand, 48071922 - 48071993
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    ||||||||  ||||||||| ||||||||| ||||||||||||| |||||||||| ||| |||| |||||||||    
T  48071922 cactatagggcttgtaacagttaaaatttcacatcaaattcaa-cccatcatggttgtgtttgttaacacgaa 48071993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 408 - 467
Target Start/End: Complemental strand, 43359425 - 43359367
Alignment:
Q  408 cttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacac 467  Q
    ||||||||||||||||||| ||| ||||||||| |||||||||| ||| |||||||||||    
T  43359425 cttgtaacaattaaaatttcacaccaaattcaa-cccatcatggttgtgtttggtaacac 43359367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 470
Target Start/End: Original strand, 39129256 - 39129317
Alignment:
Q  408 cttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    |||||||||||||||||||| |||||||||||| |||||||||  ||| | ||||||||||||    
T  39129256 cttgtaacaattaaaattttgcatcaaattcaa-cccatcatgactgtgtgtggtaacacgaa 39129317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 470
Target Start/End: Original strand, 41888765 - 41888826
Alignment:
Q  408 cttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    ||||||||||||||||||| ||||||||||||| | |||| ||| ||| ||||||||||||||    
T  41888765 cttgtaacaattaaaatttcacatcaaattcaa-ctcatcgtggctgtgtttggtaacacgaa 41888826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 470
Target Start/End: Original strand, 43860682 - 43860743
Alignment:
Q  408 cttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    ||||||| ||||||||||| ||||||||||||| |||||||||| ||| |||||||| |||||    
T  43860682 cttgtaataattaaaatttcacatcaaattcaa-cccatcatggttgtgtttggtaatacgaa 43860743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 398 - 443
Target Start/End: Original strand, 22978024 - 22978069
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 443  Q
    |||||||  |||||||||||||||||||| ||||||||||||||||    
T  22978024 cactatatgacttgtaacaattaaaatttcacatcaaattcaaccc 22978069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 441
Target Start/End: Complemental strand, 39131840 - 39131797
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaac 441  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||    
T  39131840 cactatagggcttgtaacaattaaaatttcacatcaaattcaac 39131797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 443
Target Start/End: Original strand, 42164161 - 42164196
Alignment:
Q  408 cttgtaacaattaaaattttacatcaaattcaaccc 443  Q
    ||||||||||||||||||| ||||||||||||||||    
T  42164161 cttgtaacaattaaaatttcacatcaaattcaaccc 42164196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 441
Target Start/End: Complemental strand, 42879603 - 42879560
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaac 441  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||    
T  42879603 cactatagggcttgtaacaattaaaatttcacatcaaattcaac 42879560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 470
Target Start/End: Original strand, 50935670 - 50935730
Alignment:
Q  409 ttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    ||||||||  |||||||| |||||||||||||  ||||||||| ||| ||||||||||||||    
T  50935670 ttgtaacatctaaaatttcacatcaaattcaa-tccatcatggttgtgtttggtaacacgaa 50935730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 399 - 443
Target Start/End: Complemental strand, 48073822 - 48073778
Alignment:
Q  399 actatagaacttgtaacaattaaaattttacatcaaattcaaccc 443  Q
    |||||||  ||||||| ||||||||||| ||||||||||||||||    
T  48073822 actatagggcttgtaaaaattaaaatttcacatcaaattcaaccc 48073778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 398 - 470
Target Start/End: Complemental strand, 4640246 - 4640175
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    ||||||||| ||||||||||||||||||| ||||||||||||| |||||||||| ||| ||||||||||||||    
T  4640246 cactatagagcttgtaacaattaaaatttcacatcaaattcaa-cccatcatggttgtgtttggtaacacgaa 4640175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 398 - 470
Target Start/End: Original strand, 23259031 - 23259102
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    |||||||  |||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||    
T  23259031 cactatatgacttgtaacaattaaaattttacatcgaattcaa-cccatcatggatgtgtttggtaacacgaa 23259102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 408 - 470
Target Start/End: Complemental strand, 43847572 - 43847511
Alignment:
Q  408 cttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    ||||||||||||||||||| ||||||||||||| |||||||||| ||| ||||||||||||||    
T  43847572 cttgtaacaattaaaatttcacatcaaattcaa-cccatcatggctgtgtttggtaacacgaa 43847511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 408 - 470
Target Start/End: Complemental strand, 44300087 - 44300026
Alignment:
Q  408 cttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    ||||||||||||||||||| ||||||||||||| | |||||||||||  ||||||||||||||    
T  44300087 cttgtaacaattaaaatttcacatcaaattcaa-ctcatcatggatgcatttggtaacacgaa 44300026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 398 - 455
Target Start/End: Complemental strand, 44110085 - 44110029
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccccatcatggatgt 455  Q
    ||||||||  ||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  44110085 cactatagggcttgtaacaattaaaatttcacatcaaattcaa-cccatcatggatgt 44110029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 409 - 470
Target Start/End: Complemental strand, 11757014 - 11756954
Alignment:
Q  409 ttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    |||||||||||||||||| |||||| |||||| |||||||||  ||| ||||||||||||||    
T  11757014 ttgtaacaattaaaatttcacatcacattcaa-cccatcatgactgtgtttggtaacacgaa 11756954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 441
Target Start/End: Complemental strand, 23260924 - 23260881
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaac 441  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||    
T  23260924 cactatagggcttgtaacaattaaaatttcacatcaaattcaac 23260881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 470
Target Start/End: Original strand, 4638354 - 4638410
Alignment:
Q  413 aacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    |||||||||||||| ||||||||||||| | |||||| | ||| ||||||||||||||    
T  4638354 aacaattaaaatttcacatcaaattcaa-ctcatcatagctgtgtttggtaacacgaa 4638410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 470
Target Start/End: Original strand, 42159569 - 42159629
Alignment:
Q  409 ttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    |||||||||||||||||| |||||||||||||   || ||||| ||| ||||||||||||||    
T  42159569 ttgtaacaattaaaatttcacatcaaattcaa-ttcaacatggttgtgtttggtaacacgaa 42159629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 398 - 454
Target Start/End: Original strand, 44299264 - 44299319
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccccatcatggatg 454  Q
    |||| ||| |||||||||||||||||||| |||||||||| ||  ||||||||||||    
T  44299264 cactgtaggacttgtaacaattaaaatttcacatcaaatttaa-tccatcatggatg 44299319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 408 - 470
Target Start/End: Original strand, 24159194 - 24159255
Alignment:
Q  408 cttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||    
T  24159194 cttgtaacaattaaaattttacatcaaattcaa-ctcatcatggatgtgtttggtaacacgaa 24159255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 398 - 470
Target Start/End: Complemental strand, 5090237 - 5090166
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    ||||||||  ||||||||||||||||||| ||||||||||||| |||||||||| ||| ||||||||||||||    
T  5090237 cactatagggcttgtaacaattaaaatttcacatcaaattcaa-cccatcatggctgtgtttggtaacacgaa 5090166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 466
Target Start/End: Original strand, 13866210 - 13866277
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaaca 466  Q
    ||||||||  |||||||||||||||||||||||||||| |||| |||||||||  ||| ||||||||||    
T  13866210 cactatagcgcttgtaacaattaaaattttacatcaaactcaa-cccatcatgattgtgtttggtaaca 13866277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 398 - 469
Target Start/End: Complemental strand, 34574748 - 34574678
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacga 469  Q
    ||||||||  ||||||| ||||||||||| ||||||||||||| |||||||||| ||| |||| ||||||||    
T  34574748 cactatagggcttgtaaaaattaaaatttcacatcaaattcaa-cccatcatggttgtgtttgataacacga 34574678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 470
Target Start/End: Original strand, 15508305 - 15508366
Alignment:
Q  408 cttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    ||||||||||||||||||| |||| |||||||| ||||||| || ||| ||||||||||||||    
T  15508305 cttgtaacaattaaaatttcacattaaattcaa-cccatcagggctgtgtttggtaacacgaa 15508366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 412 - 470
Target Start/End: Complemental strand, 32562550 - 32562493
Alignment:
Q  412 taacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    ||||||||||||||| |||||||||||||  ||||||||| ||| ||||||||||||||    
T  32562550 taacaattaaaatttgacatcaaattcaa-tccatcatggttgtgtttggtaacacgaa 32562493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 408 - 470
Target Start/End: Complemental strand, 14454505 - 14454444
Alignment:
Q  408 cttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||    
T  14454505 cttgtaacaattaaaatttcacatcaaattcaa-cccatcatggatgtgtttggtaacacgaa 14454444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 398 - 470
Target Start/End: Complemental strand, 24520371 - 24520300
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    ||||||||  ||||||||||||||||||| ||||||||||||| |||||||||| ||| ||||||||||||||    
T  24520371 cactatagggcttgtaacaattaaaatttcacatcaaattcaa-cccatcatggctgtgtttggtaacacgaa 24520300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 398 - 470
Target Start/End: Complemental strand, 33182722 - 33182651
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    ||||||||  ||||||||||||||||||| |||||||||||||  ||||||||||||| ||||||||||||||    
T  33182722 cactatagggcttgtaacaattaaaatttcacatcaaattcaa-tccatcatggatgtgtttggtaacacgaa 33182651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 398 - 466
Target Start/End: Original strand, 6319483 - 6319550
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaaca 466  Q
    ||||||||  ||||||||||||||||||| ||||||||||||| ||||||| |||||| ||||||||||    
T  6319483 cactatagggcttgtaacaattaaaatttcacatcaaattcaa-cccatcaaggatgtgtttggtaaca 6319550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 398 - 470
Target Start/End: Complemental strand, 6322293 - 6322222
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    ||||||||  ||||||||||||||||||| | ||||||||||| |||||||||| ||| ||||||||||||||    
T  6322293 cactatagggcttgtaacaattaaaatttcatatcaaattcaa-cccatcatggttgtgtttggtaacacgaa 6322222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 398 - 470
Target Start/End: Original strand, 18246637 - 18246708
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    ||||||||  ||||||||||||||||||| ||||||||||||| |||||||||| ||| |||||||| |||||    
T  18246637 cactatagggcttgtaacaattaaaatttcacatcaaattcaa-cccatcatggctgtgtttggtaatacgaa 18246708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 25732456 - 25732402
Alignment:
Q  61 aatagttgaacgatgaagaagaagtagagagaaaagttacctgagttgagaagcga 116  Q
    ||||||||||||||||||||| || ||||||| |||||||||||||||||||||||    
T  25732456 aatagttgaacgatgaagaagtag-agagagagaagttacctgagttgagaagcga 25732402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 408 - 470
Target Start/End: Original strand, 33178917 - 33178978
Alignment:
Q  408 cttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    ||||||||||||||||||||||||||||||||| || ||||||  ||| ||||||||||||||    
T  33178917 cttgtaacaattaaaattttacatcaaattcaa-ccaatcatgactgtgtttggtaacacgaa 33178978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 470
Target Start/End: Original strand, 14452257 - 14452317
Alignment:
Q  408 cttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    ||||| ||||||||||||| ||||||||||||| ||||||| |||||| ||||||||||||||    
T  14452257 cttgtgacaattaaaatttcacatcaaattcaa-cccatca-ggatgtgtttggtaacacgaa 14452317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 470
Target Start/End: Original strand, 36600893 - 36600954
Alignment:
Q  408 cttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    ||||||||||||||||||| |||||||||||||  ||||||||| ||| |||| |||||||||    
T  36600893 cttgtaacaattaaaatttcacatcaaattcaa-tccatcatggctgtgtttgataacacgaa 36600954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 398 - 443
Target Start/End: Complemental strand, 18248534 - 18248489
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 443  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||||    
T  18248534 cactatagggcttgtaacaattaaaatttcacatcaaattcaaccc 18248489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 398 - 443
Target Start/End: Complemental strand, 27479007 - 27478962
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 443  Q
    ||||||||| |||| |||||||||||||| ||||||||||||||||    
T  27479007 cactatagatcttgcaacaattaaaatttcacatcaaattcaaccc 27478962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 443
Target Start/End: Original strand, 39160052 - 39160087
Alignment:
Q  408 cttgtaacaattaaaattttacatcaaattcaaccc 443  Q
    ||||||||||||||||||| ||||||||||||||||    
T  39160052 cttgtaacaattaaaatttcacatcaaattcaaccc 39160087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 443
Target Start/End: Complemental strand, 39209142 - 39209107
Alignment:
Q  408 cttgtaacaattaaaattttacatcaaattcaaccc 443  Q
    ||||||||||||||||||| ||||||||||||||||    
T  39209142 cttgtaacaattaaaatttcacatcaaattcaaccc 39209107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 466
Target Start/End: Complemental strand, 36602871 - 36602818
Alignment:
Q  412 taacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaaca 466  Q
    ||||||||||||||| ||||||||||||| | |||||||| ||| ||||||||||    
T  36602871 taacaattaaaatttcacatcaaattcaa-ctcatcatggctgtgtttggtaaca 36602818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 409 - 443
Target Start/End: Complemental strand, 38932380 - 38932346
Alignment:
Q  409 ttgtaacaattaaaattttacatcaaattcaaccc 443  Q
    ||||||||||||||||||||||||||||| |||||    
T  38932380 ttgtaacaattaaaattttacatcaaattgaaccc 38932346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 398 - 442
Target Start/End: Complemental strand, 21191714 - 21191670
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaacc 442  Q
    ||||||||  ||||||||||||||||||| |||||||||| ||||    
T  21191714 cactatagggcttgtaacaattaaaatttcacatcaaatttaacc 21191670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 398 - 465
Target Start/End: Complemental strand, 71705 - 71639
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaac 465  Q
    ||||||||| ||||||||||||||||||| ||||||||||||| |||||||||| ||| |||||||||    
T  71705 cactatagagcttgtaacaattaaaatttcacatcaaattcaa-cccatcatggttgtgtttggtaac 71639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 441
Target Start/End: Original strand, 69686 - 69719
Alignment:
Q  408 cttgtaacaattaaaattttacatcaaattcaac 441  Q
    ||||||||||||||||||| ||||||||||||||    
T  69686 cttgtaacaattaaaatttcacatcaaattcaac 69719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 408 - 470
Target Start/End: Complemental strand, 31642892 - 31642831
Alignment:
Q  408 cttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    ||||||||||||||||||| ||||||||||||| |||||||||| ||| ||||||||||||||    
T  31642892 cttgtaacaattaaaatttcacatcaaattcaa-cccatcatggttgtgtttggtaacacgaa 31642831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 398 - 470
Target Start/End: Complemental strand, 15825789 - 15825718
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    |||||||  |||||||||||||||||||| ||||||||||||| |||||||||| |||  |||||||||||||    
T  15825789 cactatatgacttgtaacaattaaaatttcacatcaaattcaa-cccatcatggctgtaattggtaacacgaa 15825718  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 408 - 470
Target Start/End: Complemental strand, 19143065 - 19143004
Alignment:
Q  408 cttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    ||||||||||||||||||| ||||||||||||| | |||||||| ||| ||||||||||||||    
T  19143065 cttgtaacaattaaaatttcacatcaaattcaa-cacatcatggttgtgtttggtaacacgaa 19143004  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 398 - 455
Target Start/End: Original strand, 35019433 - 35019489
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccccatcatggatgt 455  Q
    ||||||||  ||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  35019433 cactatagtgcttgtaacaattaaaatttcacatcaaattcaa-cccatcatggatgt 35019489  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 409 - 470
Target Start/End: Original strand, 23625866 - 23625926
Alignment:
Q  409 ttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    |||||||||||||||||| |||||||||||||  ||||||| | ||| ||||||||||||||    
T  23625866 ttgtaacaattaaaatttcacatcaaattcaa-tccatcatagctgtgtttggtaacacgaa 23625926  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 441
Target Start/End: Original strand, 29725690 - 29725730
Alignment:
Q  401 tatagaacttgtaacaattaaaattttacatcaaattcaac 441  Q
    |||||| ||||||| ||||||||||||||||||||||||||    
T  29725690 tatagagcttgtaaaaattaaaattttacatcaaattcaac 29725730  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 470
Target Start/End: Original strand, 43129536 - 43129607
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    |||||||  |||||||||||||||||||| |||| |||||||| | |||||||  ||| ||||||||||||||    
T  43129536 cactatatgacttgtaacaattaaaatttcacattaaattcaa-ctcatcatgactgtgtttggtaacacgaa 43129607  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 436
Target Start/End: Complemental strand, 26951167 - 26951129
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaat 436  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  26951167 cactataggacttgtaacaattaaaatttcacatcaaat 26951129  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 443
Target Start/End: Complemental strand, 23626007 - 23625962
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 443  Q
    |||||||  |||||||||||||||||||| |||| |||||||||||    
T  23626007 cactatatgacttgtaacaattaaaatttcacattaaattcaaccc 23625962  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 443
Target Start/End: Original strand, 31640303 - 31640348
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 443  Q
    ||||||||  ||||||| ||||||||||| ||||||||||||||||    
T  31640303 cactatagggcttgtaaaaattaaaatttcacatcaaattcaaccc 31640348  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 443
Target Start/End: Original strand, 39069028 - 39069073
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 443  Q
    ||||||||  |||| |||||||||||||| ||||||||||||||||    
T  39069028 cactataggtcttgcaacaattaaaatttcacatcaaattcaaccc 39069073  T

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Target: scaffold0009 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 398 - 470
Target Start/End: Complemental strand, 94557 - 94486
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccccatcatggatgtctttggtaacacgaa 470  Q
    ||||||||  ||||||||||||||||||| ||||||||||||| |||||||||| | | ||||||||||||||    
T  94557 cactatagggcttgtaacaattaaaatttcacatcaaattcaa-cccatcatggctatgtttggtaacacgaa 94486  T

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Target: scaffold0217 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 398 - 443
Target Start/End: Complemental strand, 941 - 896
Alignment:
Q  398 cactatagaacttgtaacaattaaaattttacatcaaattcaaccc 443  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||||    
T  941 cactatagggcttgtaacaattaaaatttcacatcaaattcaaccc 896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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