View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7556_low_3 (Length: 447)
Name: NF7556_low_3
Description: NF7556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7556_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 3e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 13 - 296
Target Start/End: Original strand, 41347366 - 41347671
Alignment:
| Q |
13 |
agaaatataaaacaagaatacacgtgtaatctattatgcaaccagagagttgtactttttattatcagttnnnnnnnnnnnnnnnnngagagtagtagat |
112 |
Q |
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| T |
41347366 |
agaaatataaaacaagaatacacgtgtaatctattatgcaaccagagagttgtactttttattatcagttaaaaaagaaaagcaaaagagagtagtagat |
41347465 |
T |
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| Q |
113 |
acgccaagttaaaaaggacacaattgacttttgaagccgaaagtatgaacacaagaaaaaatattactatcaataa-----------aagtgattaataa |
201 |
Q |
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| T |
41347466 |
acgccaagttaaaaaggacacaattgacttttgaagccgaaagtatgaacacaagaaaaaatattactatcaataaaagtaaatatgaagtgataaataa |
41347565 |
T |
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| Q |
202 |
tttaagcgagtgtatgataaataatctaagctcttgtccgatttctag-----------atctcaccatgttaaataagtttggagcttattgtaaaaac |
290 |
Q |
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| T |
41347566 |
tttaagcgagtgtatgataaataatctaagctcttgtccgatttctagatccaagtcacatctcaccatgttaaataaatttggatcttattgtaaaaac |
41347665 |
T |
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| Q |
291 |
taattt |
296 |
Q |
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|||||| |
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| T |
41347666 |
taattt |
41347671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 309 - 432
Target Start/End: Original strand, 41347701 - 41347824
Alignment:
| Q |
309 |
gagatttgacgtggcagtaaacaaaaccattgatgcaaaaagagtggactaaacatgggttggtggtggtgtacctagtaggaaaccagacatcctagta |
408 |
Q |
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| T |
41347701 |
gagatttgacgtggcagtaaacaaaaccattgatgcaaaaagagtggactaaacatgggttggtggtggtgtacctagtaggaaacaagacatcctagta |
41347800 |
T |
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| Q |
409 |
cgacaaaccggtcaatctaataac |
432 |
Q |
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| T |
41347801 |
cgacaaaccggtcaatctaataac |
41347824 |
T |
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Back To:
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