View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7557_low_1 (Length: 339)
Name: NF7557_low_1
Description: NF7557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7557_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 24 - 334
Target Start/End: Original strand, 3359710 - 3360020
Alignment:
| Q |
24 |
ggaataactgatctgggactgttaagtggttctctagcaagacatgcctcaaattcaggtttcttcttttcccgagccttcaactttgaagggaaatgtt |
123 |
Q |
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| T |
3359710 |
ggaataactgatgtgggactgttaagtggttctctagcaagacatgcctcaaattcaggtttcttcttttcccgagctttcaactttgaagggaaatgtt |
3359809 |
T |
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| Q |
124 |
caaaggacttgctgaagttaacatcaaattctgattctgtatcagaaaaacaaaaatttagaggataaacagtttgtaggggtaccaaatcttcatccgg |
223 |
Q |
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| T |
3359810 |
caaaggacttgctgaagttaacatcaaattctgattctgtatcagaaaaacaaaaatttagaggataaacagtttgtaggggtaccaaatcttcatccgg |
3359909 |
T |
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| Q |
224 |
agcagcattgtattcttccccataggctcttcttgcagtttttggaacaaaatcatgcaggttattagctaaatcagaattttcactttcttcttgttgg |
323 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3359910 |
agcagcattgtattcttccccgtaggctcttcttgcagtttttggaacaaaatcatgcaggttattagctaaatcagaattttcactttcttcttgttgg |
3360009 |
T |
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| Q |
324 |
ccaacaccaaa |
334 |
Q |
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|||| |||||| |
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| T |
3360010 |
ccaataccaaa |
3360020 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 227
Target Start/End: Original strand, 22067016 - 22067087
Alignment:
| Q |
155 |
tgattctgtatcagaaaaacaaaaatttagaggataaacagtttgtaggggtaccaaatcttcatccggagca |
227 |
Q |
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|||||||| ||||| |||||||| ||| ||||||||||| |||||| |||||| |||| ||||||||||||| |
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| T |
22067016 |
tgattctgcatcagcaaaacaaattttttgaggataaacaatttgta-gggtactaaattttcatccggagca |
22067087 |
T |
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