View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7558_high_1 (Length: 603)
Name: NF7558_high_1
Description: NF7558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7558_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 264 - 588
Target Start/End: Complemental strand, 30129066 - 30128741
Alignment:
| Q |
264 |
atgacaatgcataaagcaactaatccacaaaccatggatttctcatgaagtcgcttatgttcacctaaccaaaacttttaccttgtcaatcaagccttaa |
363 |
Q |
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| T |
30129066 |
atgacaatgcataaagcaactaatccacaaaccatggatttctcatgaagtcgcttatgttcacctaaccaaaacttttaccttgtcaatcaagccttaa |
30128967 |
T |
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| Q |
364 |
tcaattgggagctacttatctatttaaacatttaatgcaatgcctccactta-gtaacaataactgcattattaacagcagaaaagtcaattatttgaac |
462 |
Q |
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| T |
30128966 |
tcaattgggagctacttatctatttaaacatttaatgcaatgcctccacttaagtaacaataactgcattattaacagcagaaaagtcaattatttgaac |
30128867 |
T |
|
| Q |
463 |
ctattgttctttagagttcaacctagaaaatcacaatttaatgcttatgcaatgcagccacttatttactaaaagcttaatgcagaacaagttatattat |
562 |
Q |
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| T |
30128866 |
ctattgttctttagagttcaacctagaaaatcacaatttaatgcttatgcaatgtatccacttatttactaaaagcttaatgcagaacaaattatattat |
30128767 |
T |
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| Q |
563 |
ttgcataaatttcacattcatttttg |
588 |
Q |
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| T |
30128766 |
ttgcataaatttcacattcatttttg |
30128741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 162 - 267
Target Start/End: Complemental strand, 30129890 - 30129785
Alignment:
| Q |
162 |
atataaatgtataattattgctgaaacctttatttaattttggttttaggaaagtaacagcagatctatttaaaaattgagtaatagtcaataataccat |
261 |
Q |
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| T |
30129890 |
atataaatgtataattattgttgaaacctttatttaattttggttttaggaaagtaacagcagatctatgtaaaaattgagtaatagtcaacaataccat |
30129791 |
T |
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| Q |
262 |
ggatga |
267 |
Q |
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|||||| |
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| T |
30129790 |
ggatga |
30129785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 121 - 154
Target Start/End: Complemental strand, 30129890 - 30129857
Alignment:
| Q |
121 |
atataaatgtataattattgttgaaacctttatt |
154 |
Q |
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| T |
30129890 |
atataaatgtataattattgttgaaacctttatt |
30129857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 341 - 457
Target Start/End: Original strand, 4365351 - 4365469
Alignment:
| Q |
341 |
ttaccttgtcaatcaagccttaatcaattgg-gagctacttatctatttaaacatttaatgcaatgcctccactt-agtaacaataactgcattattaac |
438 |
Q |
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||||||||| ||||||||| | ||||||| ||||||||||||| |||||| | | ||||||||| || |||| | ||||| |||||||||||||||| |
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| T |
4365351 |
ttaccttgtgaatcaagccatcatcaattacagagctacttatctttttaaatagctcatgcaatgcttcaacttcattaacagtaactgcattattaac |
4365450 |
T |
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| Q |
439 |
agcagaaaagtcaattatt |
457 |
Q |
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|||| ||||| |||||||| |
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| T |
4365451 |
agcacaaaagccaattatt |
4365469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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