View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7558_high_2 (Length: 538)
Name: NF7558_high_2
Description: NF7558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7558_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 7e-78; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 137 - 321
Target Start/End: Complemental strand, 38108009 - 38107823
Alignment:
| Q |
137 |
tgagtatatttttatataaaatatagatatagatgcttatgaatgtttggatcggcttttcttcggtagatctgttcagtatgttggatcattttgttaa |
236 |
Q |
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| T |
38108009 |
tgagtatatttttatataaaatatagatatagatgcttatgaatgtttggatcggcttttcttcggtggatctgttcagtatgttggatcattttgttaa |
38107910 |
T |
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| Q |
237 |
atatagtcatttattagatagattcaga--tgttgttctatcatgtggattatttagtgttcatacatatggtaatttagaaagaaa |
321 |
Q |
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| T |
38107909 |
gtatagtcatttattagatagattcggatgtgttgttctatcatgcggattatttggtgttcatgcatatggtaatttggaaagaaa |
38107823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 394 - 515
Target Start/End: Complemental strand, 38107741 - 38107620
Alignment:
| Q |
394 |
gggggagagacacacccctccaatcatcagataaaacttgagacatccttggagaggatgttctaaataagtaattctcatgtcaccttcactactcgtg |
493 |
Q |
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| T |
38107741 |
gggggagagacacacccctccaatcatcagataaaatttgagacatccttggaggggatgttctaaataagtaattctcatgtcaccttcactactcgtg |
38107642 |
T |
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| Q |
494 |
ttggcaagaacatccacacacc |
515 |
Q |
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| T |
38107641 |
ttggcaagaacatccgcacacc |
38107620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 38108137 - 38108075
Alignment:
| Q |
9 |
gtgagatgaaaataaggagaagaagataaatatgtagtaaccaataaaattctgatttgattg |
71 |
Q |
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| T |
38108137 |
gtgagatgaaaataaggagaagaagataaatatgtagtaaccaataaaattctgatttgattg |
38108075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 394 - 506
Target Start/End: Complemental strand, 22007887 - 22007774
Alignment:
| Q |
394 |
gggggagagacacacccctccaatcatcagataaaacttgagacatccttggagagg-atgttctaaataagtaattctcatgtcaccttcactactcgt |
492 |
Q |
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||||||||||||||||||| ||||||||||||||||| || ||||||||||| | || |||||||||||||||||||||||| |||| |||||||| | | |
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| T |
22007887 |
gggggagagacacacccctacaatcatcagataaaacctgggacatccttggtgggggatgttctaaataagtaattctcatctcacattcactacccat |
22007788 |
T |
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| Q |
493 |
gttggcaagaacat |
506 |
Q |
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| T |
22007787 |
gttggcaagaacat |
22007774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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