View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7558_high_3 (Length: 476)
Name: NF7558_high_3
Description: NF7558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7558_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 8 - 472
Target Start/End: Complemental strand, 39181657 - 39181205
Alignment:
| Q |
8 |
aggttgtggagcagcggggtttctgagcatagtggacttaaataagttaggacattgccaaatgaatatcacaatgagaatcatatcatattagtctctt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39181657 |
aggttgtggagcagcggggtttctgagcata----------ataagttaggacattgccaaatgaatatcacaatgagaatcatatcatattagtttctt |
39181568 |
T |
|
| Q |
108 |
aaatgatgaaaattaccacagaagtcccttaagcatgcattgcattggtctaattcttctcagagggaaatttgagtgatgaaatgcatatttaaggacc |
207 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39181567 |
aaatgatgatagttaccacagaagtcccttaagcatgcattgcattggtctaattcttctcagagggaaatttgagtgatgaaatgcatatttaaggacc |
39181468 |
T |
|
| Q |
208 |
tgtatgtgtgattctcatctttctgatattaatacgatctacattttcagcttaattgagagtttactcaataattctattagtgagaataacaatgaat |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
39181467 |
tgtatgtgtgattctcatctttctgatattaatacgatctacattttcagcttaatcgagagtttactcaataattctattagtgagaataacaatggat |
39181368 |
T |
|
| Q |
308 |
gaggcatccattgttattcccactaaattagtgtctcacatatcgatgttccagtgtagttgagtaacttagaaaatggacattttttgggttaatagat |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39181367 |
--ctcatccattgttattcccactaaattagtgtctcacatatcgatgttccagtgtagttgagtaacttagaaaatggacattttttgggttaatagat |
39181270 |
T |
|
| Q |
408 |
agtatgttctaactagtatccttcctaaacgtgttccactctatacacttgcaccttgtttggac |
472 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
39181269 |
agtatgttctaactagtatccttcctaaacgtgttccaccctatacacttacaccttgtttggac |
39181205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 386 - 442
Target Start/End: Original strand, 2111020 - 2111076
Alignment:
| Q |
386 |
gacattttttgggttaatagatagtatgttctaactagtatccttcctaaacgtgtt |
442 |
Q |
| |
|
|||||| |||||| |||||||||||||| ||||||| |||||||||||||| ||||| |
|
|
| T |
2111020 |
gacattatttggggtaatagatagtatgctctaactggtatccttcctaaaagtgtt |
2111076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 214
Target Start/End: Original strand, 2114957 - 2114995
Alignment:
| Q |
176 |
aatttgagtgatgaaatgcatatttaaggacctgtatgt |
214 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2114957 |
aatttgagcgatgaaatgcatatttaaggacctgtatgt |
2114995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 433
Target Start/End: Original strand, 2115124 - 2115215
Alignment:
| Q |
343 |
tcacatatcgatgttccagtgtagttgagtaacttagaaaatggaca-ttttttgggttaatagatagtatgttctaactagtatccttcct |
433 |
Q |
| |
|
|||||| || |||||||| ||||| | |||||||||| ||||||||| ||||||||| |||||||| ||| || ||||||||||||||| |
|
|
| T |
2115124 |
tcacatgtccatgttccaatgtagatcagtaacttagtaaatggacatttttttggggtaatagatggtacactcccactagtatccttcct |
2115215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University