View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7558_high_5 (Length: 376)
Name: NF7558_high_5
Description: NF7558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7558_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 7633081 - 7632748
Alignment:
| Q |
1 |
cgcaaaatgatttgagagaatattcgaaacagtaaggcactgaaagtaatgtccagtcgtcttcaagatccatgaatgactcaaatcgctacagaaaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7633081 |
cgcaaaatgatttgagagaatattcgaaacagtaaggcactgaaagtaatgtccagtcgtcttcaagatccatgaatgactcaaatcgctacagaaaaat |
7632982 |
T |
|
| Q |
101 |
aaatataaacaagtcaatggacatgagtatccttgaaacatggttcatatataatagaggttaagcatgattgaagatgtaccgtatgaatatgaagagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7632981 |
aaatataaacaagtcaatggacatgagtatccttgaaacatggttcatatataatagaggttaagcatgattgaagatgtaccgtatgaatatgaagagc |
7632882 |
T |
|
| Q |
201 |
tttcagattaggagtctatagaagaatgcccgttactccttcactagtgaaagtgttagtcctcataagcagatgtgtcaaattttgaaatgaaggaaga |
300 |
Q |
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||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7632881 |
tttcagattaggagtctttagaagaatgcccgttactacttcactagtgaaagtgttagtcctcagaagcagatgtgtcaaattttgaaatgaaggaaga |
7632782 |
T |
|
| Q |
301 |
tgatggagagtctcctttgaatactcaagatact |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
7632781 |
tgatggagagtctcctttgaatactcaagatact |
7632748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 7639798 - 7639668
Alignment:
| Q |
1 |
cgcaaaatgatttgagagaatattcgaaacagtaaggcactgaaagtaatgtccagtcgtcttcaagatccatgaatgactcaaatcgctacagaaaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||| ||||||||| || ||| ||||| |||||| |
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| T |
7639798 |
cgcaaaatgatttgagagaatatttgaaacagcaaggcactgaaagtaatggccagtcgtcttcaagatgtatgaatgacacagatccctacataaaaat |
7639699 |
T |
|
| Q |
101 |
aaat--ataaacaagtcaatggacatgagta |
129 |
Q |
| |
|
|||| || ||||||||||||||||| |||| |
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|
| T |
7639698 |
aaattaatgaacaagtcaatggacataagta |
7639668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 187 - 300
Target Start/End: Complemental strand, 7639591 - 7639478
Alignment:
| Q |
187 |
tgaatatgaagagctttcagattaggagtctatagaagaatgcccgttactccttcactagtgaaagtgttagtcctcataagcagatgtgtcaaatttt |
286 |
Q |
| |
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|||| |||||||||||||||||||||||||| ||| |||||| || ||||| ||||||||||||||||||||| ||||| || |||| |||||||||||| |
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| T |
7639591 |
tgaaaatgaagagctttcagattaggagtctttaggagaatgtccattactacttcactagtgaaagtgttagccctcagaaacagaagtgtcaaatttt |
7639492 |
T |
|
| Q |
287 |
gaaatgaaggaaga |
300 |
Q |
| |
|
|||||||||||||| |
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| T |
7639491 |
gaaatgaaggaaga |
7639478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 319
Target Start/End: Original strand, 31255336 - 31255384
Alignment:
| Q |
271 |
agatgtgtcaaattttgaaatgaaggaagatgatggagagtctcctttg |
319 |
Q |
| |
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|||||||||||||| | |||||||||||| |||||||||| ||||||| |
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|
| T |
31255336 |
agatgtgtcaaattgtcaaatgaaggaaggagatggagagtatcctttg |
31255384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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