View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7558_high_9 (Length: 314)

Name: NF7558_high_9
Description: NF7558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7558_high_9
NF7558_high_9
[»] chr2 (2 HSPs)
chr2 (4-300)||(44648652-44648948)
chr2 (214-261)||(15403641-15403688)
[»] chr4 (3 HSPs)
chr4 (196-299)||(2428646-2428749)
chr4 (196-299)||(47101320-47101423)
chr4 (214-271)||(1726258-1726315)
[»] chr3 (2 HSPs)
chr3 (214-266)||(43490078-43490130)
chr3 (208-280)||(49532575-49532647)
[»] chr8 (1 HSPs)
chr8 (214-266)||(38653154-38653206)
[»] chr7 (2 HSPs)
chr7 (220-266)||(33274270-33274316)
chr7 (214-266)||(3160291-3160343)
[»] chr6 (2 HSPs)
chr6 (220-266)||(10030004-10030050)
chr6 (214-263)||(4038759-4038808)


Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 4 - 300
Target Start/End: Complemental strand, 44648948 - 44648652
Alignment:
Q  4 atcagacgtgatattatgattttattaaagctagtgtagtttttgcaaaaccacatgacacatcataattctgctaaattcatcatcaatccaaacatgc 103  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  44648948 atcagacgtgatactatgattttattaaagctagtgtagtttttgcaaaaccacatgacacattataattctgctaaattcatcatcaatccaaacatgc 44648849  T
Q  104 acgcattttcagtttataatttggttatgtatgtaaatttcatttatatttttatgtcttagttgagttattatattttatatggtggtatgaataggaa 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44648848 acgcattttcagtttataatttggttatgtatgtaaatttcatttatatttttatgtcttagttgagttattatattttatatggtggtatgaataggaa 44648749  T
Q  204 aaggagggtgtggttaggaacatttgaaacagctgaagaagcagctaaagcatatgatgaagcagcaattttgatgagtggaagaaatgcaaaaact 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44648748 aaggagggtgtggttaggaacatttgaaacagctgaagaagcagctaaagcatatgatgaagcagcaattttgatgagtggaagaaatgcaaaaact 44648652  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 15403641 - 15403688
Alignment:
Q  214 tggttaggaacatttgaaacagctgaagaagcagctaaagcatatgat 261  Q
    |||||||| |||||||| ||||||||||||||||||| ||| ||||||    
T  15403641 tggttaggtacatttgacacagctgaagaagcagctagagcttatgat 15403688  T

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Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 196 - 299
Target Start/End: Complemental strand, 2428749 - 2428646
Alignment:
Q  196 aataggaaaaggagggtgtggttaggaacatttgaaacagctgaagaagcagctaaagcatatgatgaagcagcaattttgatgagtggaagaaatgcaa 295  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| | |||||||||||||||||||    
T  2428749 aataggaaaaggagggtttggttaggaacatttgagacagctgaagaagcagctagagcatatgatgaagcagccattctaatgagtggaagaaatgcaa 2428650  T
Q  296 aaac 299  Q
    ||||    
T  2428649 aaac 2428646  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 196 - 299
Target Start/End: Complemental strand, 47101423 - 47101320
Alignment:
Q  196 aataggaaaaggagggtgtggttaggaacatttgaaacagctgaagaagcagctaaagcatatgatgaagcagcaattttgatgagtggaagaaatgcaa 295  Q
    |||||||| || ||||||||| ||||||||||||||||||| ||||||||||| | |||||||||| |||| || ||||| |||||||| |||||||| |    
T  47101423 aataggaagagaagggtgtggctaggaacatttgaaacagcagaagaagcagcaagagcatatgatcaagctgcgattttaatgagtggtagaaatgcca 47101324  T
Q  296 aaac 299  Q
    ||||    
T  47101323 aaac 47101320  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 1726258 - 1726315
Alignment:
Q  214 tggttaggaacatttgaaacagctgaagaagcagctaaagcatatgatgaagcagcaa 271  Q
    ||||||||||||||||||||||| ||||| ||||| | ||||||||||||||||||||    
T  1726258 tggttaggaacatttgaaacagcagaagatgcagcaagagcatatgatgaagcagcaa 1726315  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 43490130 - 43490078
Alignment:
Q  214 tggttaggaacatttgaaacagctgaagaagcagctaaagcatatgatgaagc 266  Q
    |||||||||||||||||||||||||||| ||| |||| |||||||||||||||    
T  43490130 tggttaggaacatttgaaacagctgaagcagctgctagagcatatgatgaagc 43490078  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 280
Target Start/End: Original strand, 49532575 - 49532647
Alignment:
Q  208 agggtgtggttaggaacatttgaaacagctgaagaagcagctaaagcatatgatgaagcagcaattttgatga 280  Q
    ||||||||||||||||||||||| || || |||| |||||| | |||||||||| |||| |||||||||||||    
T  49532575 agggtgtggttaggaacatttgagacggcagaagcagcagcaagagcatatgatcaagctgcaattttgatga 49532647  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 38653206 - 38653154
Alignment:
Q  214 tggttaggaacatttgaaacagctgaagaagcagctaaagcatatgatgaagc 266  Q
    |||||||| |||||||||||||||||||| ||||||||||| |||||| ||||    
T  38653206 tggttaggtacatttgaaacagctgaagatgcagctaaagcctatgatcaagc 38653154  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 266
Target Start/End: Complemental strand, 33274316 - 33274270
Alignment:
Q  220 ggaacatttgaaacagctgaagaagcagctaaagcatatgatgaagc 266  Q
    ||||||||||| |||||||| |||||||||| ||| |||||||||||    
T  33274316 ggaacatttgagacagctgaggaagcagctagagcttatgatgaagc 33274270  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 3160291 - 3160343
Alignment:
Q  214 tggttaggaacatttgaaacagctgaagaagcagctaaagcatatgatgaagc 266  Q
    ||||||||||| ||||| |||||||||||||| || | ||| |||||||||||    
T  3160291 tggttaggaacttttgatacagctgaagaagctgcaagagcctatgatgaagc 3160343  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 266
Target Start/End: Original strand, 10030004 - 10030050
Alignment:
Q  220 ggaacatttgaaacagctgaagaagcagctaaagcatatgatgaagc 266  Q
    |||||||||||||||||||| |||||||| | ||| |||||||||||    
T  10030004 ggaacatttgaaacagctgaggaagcagcaagagcttatgatgaagc 10030050  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 4038759 - 4038808
Alignment:
Q  214 tggttaggaacatttgaaacagctgaagaagcagctaaagcatatgatga 263  Q
    ||||||||||| ||||| |||||||||||||| |||| ||| ||||||||    
T  4038759 tggttaggaacttttgatacagctgaagaagctgctagagcttatgatga 4038808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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