View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7558_low_10 (Length: 310)
Name: NF7558_low_10
Description: NF7558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7558_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 8594250 - 8593981
Alignment:
| Q |
1 |
acatgtcatcagtgcttgagaaaggataggccacaatttgtaccttgcacaaaatgtcagaaaatgtattgtttaacatgtattaaacattggtacgttt |
100 |
Q |
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| T |
8594250 |
acatgtcatcagtgcttgagaaaggataggccacaatttgtaccttgcacaaaatgtcagaaaatgtattgtttaacatgtattaaacattggtacgttt |
8594151 |
T |
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| Q |
101 |
tagatacatctaaataaccattccaaaggtcacatatttgttaatataatttatgaaattataactttgcaaaatgtgactattttttcattttcgcata |
200 |
Q |
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| T |
8594150 |
tagatacatctaaataaccattccaaaggtcacatatttgttaatataatttatgaaattataactttgcaaaatgtgactattttttcattttcgcata |
8594051 |
T |
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| Q |
201 |
taggtaccccaatatg----ttggagatattgcagagaggtgcccattttgtcgtaagaattgcaattgc |
266 |
Q |
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| T |
8594050 |
taggtaccccaatatgtcaattggagatattgcagagaggtgcccattttgtcgtaagaattgcaattgc |
8593981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 8722426 - 8722153
Alignment:
| Q |
1 |
acatgtcatcagtgcttgagaaaggataggccacaatttgtaccttgcacaaaatgtcagaaaatgtattgtttaacatgtattaaacattggtacgttt |
100 |
Q |
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| T |
8722426 |
acatgtcatcagtgcttgagaaaggataggccacaatttgtaccttgtacaaaatgtcagaaaatatactgtttaagatgtattaaacaatggtacgttt |
8722327 |
T |
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| Q |
101 |
taga-tacatctaaataaccattccaaaggtcacatatttgttaatataatttatgaaattataac-tttgcaaaatgtgacta----ttttttcatttt |
194 |
Q |
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| T |
8722326 |
tggattacatctaaataaccattccaaa-gtcatgtatttgttaatataatttatcaaattagaacttttgcaaaatgtaattattgtttttttcatttt |
8722228 |
T |
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| Q |
195 |
cgcatataggtaccccaatatg----ttggagatattgcagagaggtgcccattttgtcgtaagaattgcaattgc |
266 |
Q |
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| T |
8722227 |
-gcacataggtaccccaatatgtcaattggagatatcagagagaggtgccccttttgccgtaagaattgcaattgc |
8722153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 21239620 - 21239896
Alignment:
| Q |
1 |
acatgtcatcagtgcttgagaaaggataggccacaatttgtaccttgcacaaaatgtcagaaaatgtattgtttaacatgtattaaacattggtacgttt |
100 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| | ||| |||||||| ||||| |||| |
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| T |
21239620 |
acatgtcatcaatgcttgagaaaggataggccacaatttgtaccttgaacaaaatgtcagaaaatatattgttttagatgcattaaacaatggtatgttt |
21239719 |
T |
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| Q |
101 |
tagat-acatctaaataaccattccaaaggtcacatatttgttaatata--atttatgaaattataactttgca-aaatgtgacta----ttttttcatt |
192 |
Q |
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||||| ||||||||||| ||||| ||||| ||| |||||||||||||| | |||| ||||| |||||| || |||||| |||| |||||||||| |
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| T |
21239720 |
tagattacatctaaatagccatttcaaag-tcatgtatttgttaatatataacttatccaattagaacttttcataaatgtaactactttttttttcatt |
21239818 |
T |
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| Q |
193 |
ttcgcatataggtaccccaatat----gttggagatattgcagagaggtgcccattttgtcgtaagaattgcaattgc |
266 |
Q |
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|| ||| |||||||||||||||| ||||||||||| | |||||||||||| ||||| |||||||||| |||||| |
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| T |
21239819 |
tttgcacataggtaccccaatatgtcagttggagatatcggagagaggtgccccttttgctgtaagaattggaattgc |
21239896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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