View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7558_low_11 (Length: 284)
Name: NF7558_low_11
Description: NF7558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7558_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 52376973 - 52376695
Alignment:
| Q |
1 |
ccatcattaaaagtacctacacttaaaaaaggggaataggaagaaatgtgcaacaaaacaagattttcataccttcatttttacactaaccaactatttg |
100 |
Q |
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| T |
52376973 |
ccatcattagaagtacctacacttaaaaaagtggaataggaagaaatgtgcaacaaaacaagattttcataccttaatttttacactaaccaactatttg |
52376874 |
T |
|
| Q |
101 |
ttacaaacagtgctacaagcaatggcacaggaacttcacctccaaaaccagcagattcaccaattggtgctgcagaagatttgcctgcagacacaccaga |
200 |
Q |
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| T |
52376873 |
ttacaaacagtgctacaagcaatggcacaggaagttcacctccaaaatcagcagattcaccaattggtgctgcagaagatttgcctgcagacacaccaga |
52376774 |
T |
|
| Q |
201 |
aggaggagcaccgacaccaacaacagatggttcatccaataaatcaccacaacaagcaccaacaaatgcaccaccaaac |
279 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52376773 |
aggaggagcaccgacaccaacagcagatggttcatccaataaatcaccacaacaagcaccaacaaatgcaccatcaaac |
52376695 |
T |
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