View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7558_low_14 (Length: 270)
Name: NF7558_low_14
Description: NF7558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7558_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 28394367 - 28394553
Alignment:
| Q |
17 |
atagggctcacatgaagcaatcacaatcaataaatcatattatatagctaaaattgatcctacaatacgttgaatcaatgaaaaaatatgttgtcaccta |
116 |
Q |
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| T |
28394367 |
atagggctcacatgaagcaatcacaatcaataaatcatattatatagctaaaattgatcctacaatacgttgaatcaatgaaaaaatatgttgtcaccta |
28394466 |
T |
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| Q |
117 |
ttggttcacattctataaataactttgccacgaccaaacaatattatttctcttttgtgnnnnnnncttttcttatcatgaaaggtc |
203 |
Q |
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| T |
28394467 |
ttggttcacattctataaataactttgccacgaccaaacaatattatttctcttttgtgtttttttcttttcttatcatgaaaggtc |
28394553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 28369814 - 28369976
Alignment:
| Q |
17 |
atagggctcacatgaagcaatcacaatcaataaatc-atattatatagctaaaa-ttgatcctacaatacgttgaatcaatgaaaaaatatgttgtcacc |
114 |
Q |
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| T |
28369814 |
atagggctcacatgaagcgatcacaatcgataaaactatattctatagctaacggttgatcctacaatacgctcaatcaatgcaaaaatatgttgtcacc |
28369913 |
T |
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| Q |
115 |
tattgg-ttcacatt-ctataaataactttgccacgaccaaacaatattatttctcttttgtg |
175 |
Q |
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| T |
28369914 |
tattgggttcatatttctataaataactttgccacggccaaacagtattatttctcttttgtg |
28369976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 28377632 - 28377794
Alignment:
| Q |
17 |
atagggctcacatgaagcaatcacaatcaataaatc-atattatatagctaaaa-ttgatcctacaatacgttgaatcaatgaaaaaatatgttgtcacc |
114 |
Q |
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|||||||||||||||||| ||||||||| ||||| | ||||| ||||||||| |||||||||||||||| | |||||||| ||||||||||||||||| |
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| T |
28377632 |
atagggctcacatgaagcgatcacaatcgataaaactatattctatagctaacggttgatcctacaatacgctcaatcaatgcaaaaatatgttgtcacc |
28377731 |
T |
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| Q |
115 |
tattgg-ttcacatt-ctataaataactttgccacgaccaaacaatattatttctcttttgtg |
175 |
Q |
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|||||| |||| ||| |||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
28377732 |
tattgggttcatatttctataaataactttgccacggccaaacagtattatttctcttttgtg |
28377794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 28385454 - 28385616
Alignment:
| Q |
17 |
atagggctcacatgaagcaatcacaatcaataaatc-atattatatagctaaaa-ttgatcctacaatacgttgaatcaatgaaaaaatatgttgtcacc |
114 |
Q |
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|||||||||||||||||| ||||||||| ||||| | ||||| ||||||||| |||||||||||||||| | |||||||| ||||||||||||||||| |
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| T |
28385454 |
atagggctcacatgaagcgatcacaatcgataaaactatattctatagctaacggttgatcctacaatacgctcaatcaatgcaaaaatatgttgtcacc |
28385553 |
T |
|
| Q |
115 |
tattgg-ttcacatt-ctataaataactttgccacgaccaaacaatattatttctcttttgtg |
175 |
Q |
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|||||| |||| ||| |||||||||||||||||||| ||||||| |||||||||||||||||| |
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|
| T |
28385554 |
tattgggttcatatttctataaataactttgccacggccaaacagtattatttctcttttgtg |
28385616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 28390766 - 28390836
Alignment:
| Q |
17 |
atagggctcacatgaagcaatcacaatcaataaatcatattatatagctaaaattgatcctacaatacgtt |
87 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||| |||||||||| |
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| T |
28390766 |
atagggctcacatgaagcaatcacaatcaataaataatattgtatagctaacattgatcgcacaatacgtt |
28390836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 175
Target Start/End: Original strand, 28390845 - 28390882
Alignment:
| Q |
138 |
actttgccacgaccaaacaatattatttctcttttgtg |
175 |
Q |
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| T |
28390845 |
actttgccacggccaaacaatattatttctcttttgtg |
28390882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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