View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7558_low_18 (Length: 225)
Name: NF7558_low_18
Description: NF7558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7558_low_18 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 21 - 207
Target Start/End: Complemental strand, 103567 - 103381
Alignment:
| Q |
21 |
gagtatggagttcttctctcaactgtaagatgagtggtgtgatcggacccacaaatctcttcccgtacaagtaagacataggcatgtataccaatcgaca |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
103567 |
gagtatggagttcttctctcaactgtaagatgagtggtgtgatcggacccacaaatctcttcccgtacaagtaagacataggcatgtataccaatcgaca |
103468 |
T |
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| Q |
121 |
ataacaccacattttagctgcaattaaattaaattaggatgaaaatgagatcaaatataaactctcaactccataattcttttgcat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
103467 |
ataacaccacattttagctgcaattaaattaaattaggatgaaaatgagatcaaatataaactctcaactccataattctattgcat |
103381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 23 - 140
Target Start/End: Complemental strand, 164531 - 164414
Alignment:
| Q |
23 |
gtatggagttcttctctcaactgtaagatgagtggtgtgatcggacccacaaatctcttcccgtacaagtaagacataggcatgtataccaatcgacaat |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||| || ||||||| |
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| T |
164531 |
gtatggagttcttctctcaactgtaagatgagtggtgtgataggacctacaaacctcttcccgtacaagtaagacatcggcatgtatactaaccgacaat |
164432 |
T |
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| Q |
123 |
aacaccacattttagctg |
140 |
Q |
| |
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|||||||||||||||||| |
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| T |
164431 |
aacaccacattttagctg |
164414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 22 - 146
Target Start/End: Original strand, 12137731 - 12137855
Alignment:
| Q |
22 |
agtatggagttcttctctcaactgtaagatgagtggtgtgatcggacccacaaatctcttcccgtacaagtaagacataggcatgtataccaatcgacaa |
121 |
Q |
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||||| ||||||||||||||||||||||||||| |||||||| | ||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
12137731 |
agtatagagttcttctctcaactgtaagatgagcggtgtgattgaacccacaaatctctttccatacaagtaagacataggcatgtataccaatcgacag |
12137830 |
T |
|
| Q |
122 |
taacaccacattttagctgcaatta |
146 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
12137831 |
taacaccacattttagctgcaatta |
12137855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 31 - 147
Target Start/End: Complemental strand, 13052482 - 13052366
Alignment:
| Q |
31 |
ttcttctctcaactgtaagatgagtggtgtgatcggacccacaaatctcttcccgtacaagtaagacataggcatgtataccaatcgacaataacaccac |
130 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
13052482 |
ttcttctctcaactgtaagatgagtggtgtgattcgacccacaaacctcttcccgtacaagtaagacataggcatgtatgtcaatcgacaataacaccac |
13052383 |
T |
|
| Q |
131 |
attttagctgcaattaa |
147 |
Q |
| |
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|||||| || ||||||| |
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| T |
13052382 |
attttacctacaattaa |
13052366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 7e-39; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 27 - 140
Target Start/End: Original strand, 5670418 - 5670531
Alignment:
| Q |
27 |
ggagttcttctctcaactgtaagatgagtggtgtgatcggacccacaaatctcttcccgtacaagtaagacataggcatgtataccaatcgacaataaca |
126 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| || ||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5670418 |
ggagttcttctctcaactttaagatgagtggtgttattggaccgacaaacctcttcccatacaagtaagacataggcatgtataccaatcgacaataaca |
5670517 |
T |
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| Q |
127 |
ccacattttagctg |
140 |
Q |
| |
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| ||||| |||||| |
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| T |
5670518 |
caacattctagctg |
5670531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 27 - 140
Target Start/End: Original strand, 5722532 - 5722645
Alignment:
| Q |
27 |
ggagttcttctctcaactgtaagatgagtggtgtgatcggacccacaaatctcttcccgtacaagtaagacataggcatgtataccaatcgacaataaca |
126 |
Q |
| |
|
|||||||||||||||||| |||||| | ||||||||| ||||| ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5722532 |
ggagttcttctctcaactttaagatcaatggtgtgattggaccgacaaacctctttccatacaagtaagacataggcatgtataccaatcgacaataaca |
5722631 |
T |
|
| Q |
127 |
ccacattttagctg |
140 |
Q |
| |
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| ||||| |||||| |
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| T |
5722632 |
caacattctagctg |
5722645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 140
Target Start/End: Original strand, 5692192 - 5692305
Alignment:
| Q |
27 |
ggagttcttctctcaactgtaagatgagtggtgtgatcggacccacaaatctcttcccgtacaagtaagacataggcatgtataccaatcgacaataaca |
126 |
Q |
| |
|
|||||||||||||||||| |||| | | ||||||||| ||||| ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5692192 |
ggagttcttctctcaactttaaggtcaatggtgtgattggaccgacaaacctctttccatacaagtaagacataggcatgtataccaatcgacaataaca |
5692291 |
T |
|
| Q |
127 |
ccacattttagctg |
140 |
Q |
| |
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| ||||| |||||| |
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| T |
5692292 |
caacattctagctg |
5692305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 92734 - 92861
Alignment:
| Q |
21 |
gagtatggagttcttctctcaactgtaagatgagtggtgtgatcggacccacaaatctcttcccgtacaagtaagacataggcatgtataccaatcgaca |
120 |
Q |
| |
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||||||| |||||||||||||||||||||| |||||||||||| ||||| ||||| ||||| ||||||||||||||||| || | |||||||| |||||| |
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| T |
92734 |
gagtatgaagttcttctctcaactgtaagacgagtggtgtgattggaccgacaaacctctttccgtacaagtaagacatcggtaagtataccagtcgaca |
92833 |
T |
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| Q |
121 |
ataacaccacattttagctgcaattaaa |
148 |
Q |
| |
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||| |||||||||||||||| ||||||| |
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| T |
92834 |
atagcaccacattttagctgaaattaaa |
92861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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