View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7558_low_4 (Length: 410)

Name: NF7558_low_4
Description: NF7558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7558_low_4
NF7558_low_4
[»] chr7 (4 HSPs)
chr7 (172-288)||(7632634-7632752)
chr7 (354-392)||(7632530-7632568)
chr7 (3-42)||(4300436-4300475)
chr7 (9-45)||(13882861-13882897)
[»] chr2 (6 HSPs)
chr2 (1-45)||(2155844-2155888)
chr2 (1-45)||(2165800-2165844)
chr2 (1-45)||(15129295-15129339)
chr2 (3-45)||(27952489-27952531)
chr2 (3-45)||(27956325-27956367)
chr2 (1-45)||(22011309-22011353)
[»] chr6 (9 HSPs)
chr6 (1-45)||(3535912-3535956)
chr6 (1-45)||(3542123-3542167)
chr6 (3-45)||(29340977-29341019)
chr6 (3-45)||(30052079-30052121)
chr6 (139-171)||(3535786-3535818)
chr6 (139-171)||(3541997-3542029)
chr6 (3-45)||(30049792-30049834)
chr6 (142-171)||(30049667-30049696)
chr6 (142-171)||(30051954-30051983)
[»] chr1 (5 HSPs)
chr1 (3-45)||(50857615-50857657)
chr1 (1-45)||(13444156-13444200)
chr1 (142-171)||(12034239-12034268)
chr1 (139-171)||(8930975-8931007)
chr1 (1-45)||(13441767-13441811)
[»] chr8 (8 HSPs)
chr8 (8-45)||(22926822-22926859)
chr8 (7-45)||(22922025-22922063)
chr8 (3-45)||(42891835-42891877)
chr8 (142-173)||(22926942-22926973)
chr8 (1-43)||(23573462-23573504)
chr8 (142-171)||(18468467-18468496)
chr8 (142-171)||(22922160-22922189)
chr8 (9-45)||(6845214-6845250)
[»] chr4 (3 HSPs)
chr4 (1-45)||(22691188-22691232)
chr4 (1-42)||(24667567-24667608)
chr4 (13-45)||(6659510-6659542)
[»] chr3 (6 HSPs)
chr3 (1-45)||(43306840-43306884)
chr3 (1-38)||(41218688-41218725)
chr3 (9-45)||(43304134-43304170)
chr3 (1-45)||(3063905-3063949)
chr3 (1-45)||(3069043-3069087)
chr3 (1-45)||(53012903-53012947)
[»] scaffold0110 (3 HSPs)
scaffold0110 (3-45)||(46875-46917)
scaffold0110 (142-171)||(45926-45955)
scaffold0110 (13-45)||(45443-45475)
[»] chr5 (1 HSPs)
chr5 (3-45)||(40778957-40778999)


Alignment Details
Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 172 - 288
Target Start/End: Complemental strand, 7632752 - 7632634
Alignment:
Q  172 atactagtagtacaaaaagcataaatagtttgatcattatgatataaagaacaatgcaatgagtataaat--nnnnnnncacaaataaggcaacattgtt 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||    
T  7632752 atactagtagtacaaaaagcataaatagtttgatcattatgatataaagaacaatgcaatgagtataaataaaaaaaaacacaaataaggcaacattgtt 7632653  T
Q  270 aattcgaattatcttaaac 288  Q
    |||| ||||||||||||||    
T  7632652 aattggaattatcttaaac 7632634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 354 - 392
Target Start/End: Complemental strand, 7632568 - 7632530
Alignment:
Q  354 tcaaacatacctgaagagattcatctgataagctgagag 392  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  7632568 tcaaacatacctgaagagatccatctgataagctgagag 7632530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 4300475 - 4300436
Alignment:
Q  3 aaaagtgtgtctcttaggctgcataagttctgcttatata 42  Q
    |||||||||||||||||||| |||||||||| ||||||||    
T  4300475 aaaagtgtgtctcttaggctacataagttctccttatata 4300436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 13882861 - 13882897
Alignment:
Q  9 gtgtctcttaggctgcataagttctgcttatatagtg 45  Q
    |||||||||||| | ||||||||||||||||||||||    
T  13882861 gtgtctcttaggatacataagttctgcttatatagtg 13882897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 2155888 - 2155844
Alignment:
Q  1 ataaaagtgtgtctcttaggctgcataagttctgcttatatagtg 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  2155888 ataaaagtgtgtctcttaggctgcataagttctgcttatatagtg 2155844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 2165844 - 2165800
Alignment:
Q  1 ataaaagtgtgtctcttaggctgcataagttctgcttatatagtg 45  Q
    |||||| |||||||||||||||||||||||||| |||||||||||    
T  2165844 ataaaaatgtgtctcttaggctgcataagttctccttatatagtg 2165800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 15129339 - 15129295
Alignment:
Q  1 ataaaagtgtgtctcttaggctgcataagttctgcttatatagtg 45  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||    
T  15129339 ataaaagtgtgcctcttaggctacataagttctgcttatatagtg 15129295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 27952489 - 27952531
Alignment:
Q  3 aaaagtgtgtctcttaggctgcataagttctgcttatatagtg 45  Q
    ||||||||| |||||||||| ||||||||||||||||||||||    
T  27952489 aaaagtgtgcctcttaggctacataagttctgcttatatagtg 27952531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 27956325 - 27956367
Alignment:
Q  3 aaaagtgtgtctcttaggctgcataagttctgcttatatagtg 45  Q
    ||||||||| |||||||||| ||||||||||||||||||||||    
T  27956325 aaaagtgtgcctcttaggctacataagttctgcttatatagtg 27956367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 22011353 - 22011309
Alignment:
Q  1 ataaaagtgtgtctcttaggctgcataagttctgcttatatagtg 45  Q
    ||||||||  |||||||||||| |||||||| |||||||||||||    
T  22011353 ataaaagtcggtctcttaggctacataagttttgcttatatagtg 22011309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 3535956 - 3535912
Alignment:
Q  1 ataaaagtgtgtctcttaggctgcataagttctgcttatatagtg 45  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  3535956 ataaaagtgtgcctcttaggctgcataagttctgcttatatagtg 3535912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 3542167 - 3542123
Alignment:
Q  1 ataaaagtgtgtctcttaggctgcataagttctgcttatatagtg 45  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  3542167 ataaaagtgtgcctcttaggctgcataagttctgcttatatagtg 3542123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 29340977 - 29341019
Alignment:
Q  3 aaaagtgtgtctcttaggctgcataagttctgcttatatagtg 45  Q
    |||||||| | ||||||||||||||||||||||||||||||||    
T  29340977 aaaagtgtttgtcttaggctgcataagttctgcttatatagtg 29341019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 30052121 - 30052079
Alignment:
Q  3 aaaagtgtgtctcttaggctgcataagttctgcttatatagtg 45  Q
    |||||||||||||||| |||||||||||| |||||||||||||    
T  30052121 aaaagtgtgtctcttaagctgcataagttttgcttatatagtg 30052079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 171
Target Start/End: Complemental strand, 3535818 - 3535786
Alignment:
Q  139 ctttaaaattactaaggaagccctcctacatca 171  Q
    |||||||||||||||||||||||||||||||||    
T  3535818 ctttaaaattactaaggaagccctcctacatca 3535786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 171
Target Start/End: Complemental strand, 3542029 - 3541997
Alignment:
Q  139 ctttaaaattactaaggaagccctcctacatca 171  Q
    |||||||||||||||||||||||||||||||||    
T  3542029 ctttaaaattactaaggaagccctcctacatca 3541997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 30049834 - 30049792
Alignment:
Q  3 aaaagtgtgtctcttaggctgcataagttctgcttatatagtg 45  Q
    |||||||||||||||| |||| ||||||| |||||||||||||    
T  30049834 aaaagtgtgtctcttaagctgaataagttttgcttatatagtg 30049792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 171
Target Start/End: Complemental strand, 30049696 - 30049667
Alignment:
Q  142 taaaattactaaggaagccctcctacatca 171  Q
    ||||||||||||||||||||||||||||||    
T  30049696 taaaattactaaggaagccctcctacatca 30049667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 171
Target Start/End: Complemental strand, 30051983 - 30051954
Alignment:
Q  142 taaaattactaaggaagccctcctacatca 171  Q
    ||||||||||||||||||||||||||||||    
T  30051983 taaaattactaaggaagccctcctacatca 30051954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 50857615 - 50857657
Alignment:
Q  3 aaaagtgtgtctcttaggctgcataagttctgcttatatagtg 45  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  50857615 aaaagtgtgcctcttaggctgcataagttctgcttatatagtg 50857657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 13444156 - 13444200
Alignment:
Q  1 ataaaagtgtgtctcttaggctgcataagttctgcttatatagtg 45  Q
    |||||| |||| |||||||||| ||||||||||||||||||||||    
T  13444156 ataaaaatgtgcctcttaggctacataagttctgcttatatagtg 13444200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 171
Target Start/End: Original strand, 12034239 - 12034268
Alignment:
Q  142 taaaattactaaggaagccctcctacatca 171  Q
    ||||||||||||||||||||||||||||||    
T  12034239 taaaattactaaggaagccctcctacatca 12034268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 171
Target Start/End: Complemental strand, 8931007 - 8930975
Alignment:
Q  139 ctttaaaattactaaggaagccctcctacatca 171  Q
    |||||||||||||||||||| ||||||||||||    
T  8931007 ctttaaaattactaaggaagtcctcctacatca 8930975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 13441767 - 13441811
Alignment:
Q  1 ataaaagtgtgtctcttaggctgcataagttctgcttatatagtg 45  Q
    ||||||||||| ||||||||||  |||||||| ||||||||||||    
T  13441767 ataaaagtgtgcctcttaggctatataagttcagcttatatagtg 13441811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 22926822 - 22926859
Alignment:
Q  8 tgtgtctcttaggctgcataagttctgcttatatagtg 45  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22926822 tgtgtctcttaggctgcataagttctgcttatatagtg 22926859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 22922025 - 22922063
Alignment:
Q  7 gtgtgtctcttaggctgcataagttctgcttatatagtg 45  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  22922025 gtgtgtctcttaggctgcataagttctgcatatatagtg 22922063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 42891835 - 42891877
Alignment:
Q  3 aaaagtgtgtctcttaggctgcataagttctgcttatatagtg 45  Q
    ||||||||| |||||||||| ||||||||||||||||||||||    
T  42891835 aaaagtgtgcctcttaggctacataagttctgcttatatagtg 42891877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 173
Target Start/End: Original strand, 22926942 - 22926973
Alignment:
Q  142 taaaattactaaggaagccctcctacatcaat 173  Q
    ||||||||||||||||||||||||||||||||    
T  22926942 taaaattactaaggaagccctcctacatcaat 22926973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 23573504 - 23573462
Alignment:
Q  1 ataaaagtgtgtctcttaggctgcataagttctgcttatatag 43  Q
    ||||||||||| |||||||||| ||||||||| ||||||||||    
T  23573504 ataaaagtgtgcctcttaggctacataagttccgcttatatag 23573462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 171
Target Start/End: Complemental strand, 18468496 - 18468467
Alignment:
Q  142 taaaattactaaggaagccctcctacatca 171  Q
    ||||||||||||||||||||||||||||||    
T  18468496 taaaattactaaggaagccctcctacatca 18468467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 171
Target Start/End: Original strand, 22922160 - 22922189
Alignment:
Q  142 taaaattactaaggaagccctcctacatca 171  Q
    ||||||||||||||||||||||||||||||    
T  22922160 taaaattactaaggaagccctcctacatca 22922189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 6845250 - 6845214
Alignment:
Q  9 gtgtctcttaggctgcataagttctgcttatatagtg 45  Q
    |||||||||||| | ||||||||||||||||||||||    
T  6845250 gtgtctcttaggatacataagttctgcttatatagtg 6845214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 22691232 - 22691188
Alignment:
Q  1 ataaaagtgtgtctcttaggctgcataagttctgcttatatagtg 45  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||    
T  22691232 ataaaagtgtgcctcttaggctacataagttctgcttatatagtg 22691188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 24667608 - 24667567
Alignment:
Q  1 ataaaagtgtgtctcttaggctgcataagttctgcttatata 42  Q
    ||||||||||| |||||||||| |||||||||||||||||||    
T  24667608 ataaaagtgtgcctcttaggctacataagttctgcttatata 24667567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 6659510 - 6659542
Alignment:
Q  13 ctcttaggctgcataagttctgcttatatagtg 45  Q
    |||||||||| ||||||||||||||||||||||    
T  6659510 ctcttaggctacataagttctgcttatatagtg 6659542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 43306840 - 43306884
Alignment:
Q  1 ataaaagtgtgtctcttaggctgcataagttctgcttatatagtg 45  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||    
T  43306840 ataaaagtgtgcctcttaggctacataagttctgcttatatagtg 43306884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 41218725 - 41218688
Alignment:
Q  1 ataaaagtgtgtctcttaggctgcataagttctgctta 38  Q
    |||||||||||||||||||||| |||||||||||||||    
T  41218725 ataaaagtgtgtctcttaggctccataagttctgctta 41218688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 43304134 - 43304170
Alignment:
Q  9 gtgtctcttaggctgcataagttctgcttatatagtg 45  Q
    |||||||||||||| ||||||||||||||||||||||    
T  43304134 gtgtctcttaggctacataagttctgcttatatagtg 43304170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 3063905 - 3063949
Alignment:
Q  1 ataaaagtgtgtctcttaggctgcataagttctgcttatatagtg 45  Q
    ||||||||||  |||||||||| |||||||| |||||||||||||    
T  3063905 ataaaagtgtacctcttaggctacataagttatgcttatatagtg 3063949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 3069043 - 3069087
Alignment:
Q  1 ataaaagtgtgtctcttaggctgcataagttctgcttatatagtg 45  Q
    |||||||||||  ||||||||| |||||||| |||||||||||||    
T  3069043 ataaaagtgtgcatcttaggctacataagttatgcttatatagtg 3069087  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 53012947 - 53012903
Alignment:
Q  1 ataaaagtgtgtctcttaggctgcataagttctgcttatatagtg 45  Q
    ||||||||||| |||||||||| ||| |||| |||||||||||||    
T  53012947 ataaaagtgtgcctcttaggctacattagttatgcttatatagtg 53012903  T

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Target: scaffold0110 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 46875 - 46917
Alignment:
Q  3 aaaagtgtgtctcttaggctgcataagttctgcttatatagtg 45  Q
    |||||||||||||||| |||| ||||||| |||||||||||||    
T  46875 aaaagtgtgtctcttaagctggataagttttgcttatatagtg 46917  T

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Target: scaffold0110; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 171
Target Start/End: Original strand, 45926 - 45955
Alignment:
Q  142 taaaattactaaggaagccctcctacatca 171  Q
    ||||||||||||||||||||||||||||||    
T  45926 taaaattactaaggaagccctcctacatca 45955  T

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Target: scaffold0110; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 45443 - 45475
Alignment:
Q  13 ctcttaggctgcataagttctgcttatatagtg 45  Q
    ||||||||||||||||||||| |||||||||||    
T  45443 ctcttaggctgcataagttctccttatatagtg 45475  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 40778957 - 40778999
Alignment:
Q  3 aaaagtgtgtctcttaggctgcataagttctgcttatatagtg 45  Q
    ||||||||| ||||||| || ||||||||||||||||||||||    
T  40778957 aaaagtgtgcctcttagactacataagttctgcttatatagtg 40778999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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