View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7558_low_6 (Length: 345)
Name: NF7558_low_6
Description: NF7558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7558_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 137; Significance: 2e-71; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 189 - 329
Target Start/End: Complemental strand, 10868041 - 10867901
Alignment:
| Q |
189 |
agtaaaacttattcatcttcttgcatgcataaataatcgtaaaatgacaactaaaactaacaaagtaattaacaaatacaagcaatgaatattgatcatg |
288 |
Q |
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| T |
10868041 |
agtaaaacttattcatcttcttgcatgcataaataatcgtaaaatgacaactaaaactaacaaagtaattaacaaatacaagcaatgaatattgatcatg |
10867942 |
T |
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| Q |
289 |
atgataactacaagattatttatctcgcacttgtggtatct |
329 |
Q |
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| T |
10867941 |
atgataagtacaagattatttatctcgcacttgtggtatct |
10867901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 189 - 329
Target Start/End: Original strand, 10886328 - 10886468
Alignment:
| Q |
189 |
agtaaaacttattcatcttcttgcatgcataaataatcgtaaaatgacaactaaaactaacaaagtaattaacaaatacaagcaatgaatattgatcatg |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10886328 |
agtaaaacttattcatcttcttgcatgcataaataatcgtaaaatgacaaataaaactaacaaagtaattaacaaatacaagcaatgaatattgatcatg |
10886427 |
T |
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| Q |
289 |
atgataactacaagattatttatctcgcacttgtggtatct |
329 |
Q |
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| T |
10886428 |
atggtaagtacaagattatttatctcgcacttgtggtatct |
10886468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 71 - 183
Target Start/End: Complemental strand, 10868228 - 10868116
Alignment:
| Q |
71 |
tggttatgaaaaatttctacacttcaatttctacatcgagataattgtatcatttcaaatttaaatagaacattaattattattttgaaaataactcttt |
170 |
Q |
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| T |
10868228 |
tggttatgaaaaatttctacacttcaatttcaacatcgagataattgtatcatttcaaatttaaatagaacattaattattattttgaaaataactcttt |
10868129 |
T |
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| Q |
171 |
ttgatatttattg |
183 |
Q |
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| T |
10868128 |
ttgatatttattg |
10868116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 71 - 183
Target Start/End: Original strand, 10886141 - 10886253
Alignment:
| Q |
71 |
tggttatgaaaaatttctacacttcaatttctacatcgagataattgtatcatttcaaatttaaatagaacattaattattattttgaaaataactcttt |
170 |
Q |
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| T |
10886141 |
tggttatgaaaaatttctacacttcaatttctacatcgagataattgtatcatttcaaatttaaatagaacgttaattattattttgaaaataactcttt |
10886240 |
T |
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| Q |
171 |
ttgatatttattg |
183 |
Q |
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| T |
10886241 |
ttgatatttattg |
10886253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 10886049 - 10886108
Alignment:
| Q |
11 |
cagagatacaagttacaatgatagatacaatgaacgcaaaaagtgtaactaagaaaagta |
70 |
Q |
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| T |
10886049 |
cagagatacaagttacaatgatagatacaatgaacgcaaaaagtgtaactaagaaaagta |
10886108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 10868320 - 10868261
Alignment:
| Q |
11 |
cagagatacaagttacaatgatagatacaatgaacgcaaaaagtgtaactaagaaaagta |
70 |
Q |
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| T |
10868320 |
cagagaaacaagttaaaatgatagatacaatgaacgcaaaaagtgtaaagaagaaaagta |
10868261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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