View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7558_low_7 (Length: 337)
Name: NF7558_low_7
Description: NF7558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7558_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 326
Target Start/End: Original strand, 3446081 - 3446389
Alignment:
| Q |
17 |
cacctaccaatacaatgacatgaacagtgcttttgtatattctgggtatggttgggaacaaacataactgcataataagttacaaaattgacatatcaac |
116 |
Q |
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| T |
3446081 |
cacctaccaatacaatgacatgaacagtgcttttgtatattctgggtatggttgggaacaaacataactgcataataagttacaaaattgacatatcaac |
3446180 |
T |
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| Q |
117 |
ttatctacatatgaagcttgtgggtgccactggatcatgtatagccatatgtttgaatcatttgatgtcaatgttctgtcgtgtaaaaatataaccaaga |
216 |
Q |
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| T |
3446181 |
ttatctacatatgaagcttgtgggtgccactggatcatgtatagccatatgtttgaatcatttgatgtcaatgttctgtcgtgtaaaaataaaaccaaga |
3446280 |
T |
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| Q |
217 |
aaattgtcgaaaattttggatattgcaaccacatagatcaattctatttcannnnnnngactctatcattgttttattttgttcttacttactccatatt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
3446281 |
aaattgtcgaaaattttggatattgcaaccacatagatcaattctatttca-ttttttgattctatcattgttttattttgttcttacttactccatatt |
3446379 |
T |
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| Q |
317 |
atttcttcat |
326 |
Q |
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|||||||||| |
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| T |
3446380 |
atttcttcat |
3446389 |
T |
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