View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7558_low_8 (Length: 326)
Name: NF7558_low_8
Description: NF7558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7558_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 2605040 - 2604887
Alignment:
| Q |
1 |
attcatgtaacattaaattgtgttgaaagagacatgattggatctgcaaagcctgacatcattgcacacgtcaaactaacnnnnnnnngatcaaatcatg |
100 |
Q |
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| T |
2605040 |
attcatgtaacattaaattgtgttgaaagagacatgattggatctgcaaagcctgacatcattgcacacgtcaaactaacaaaaaaaagaccaaatcatg |
2604941 |
T |
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| Q |
101 |
agaaaggaaaattgcaatttggtcac--gaacactaaatgctgttggttttgtg |
152 |
Q |
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| T |
2604940 |
agaaaggaaaattgcaatttggtcacgagaacactaaatgctgttggttttgtg |
2604887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 242 - 309
Target Start/End: Complemental strand, 2604797 - 2604730
Alignment:
| Q |
242 |
aatagtatgtttgaaaaggtattcgattaagagaaatgatgatttagtttgtattggtgtacaacttt |
309 |
Q |
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||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2604797 |
aatagtatgtttgaaaatgtattcaattaagagaaatgatgatttagtttgtattggtgtacaacttt |
2604730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 26371906 - 26372055
Alignment:
| Q |
1 |
attcatgtaacattaaattgtgttgaaagagacatgattggatctgcaaagcctgacatcattgcacacgtcaaactaacnnnnnnnngatcaaatcatg |
100 |
Q |
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|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||| || ||| ||||| |
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| T |
26371906 |
attcatataacattaaaatgtgttgaaagagacatgattggatctgcaaagcctgacatcattgcacacaac-aagtaac-aaaaaaagaccaagtcatg |
26372003 |
T |
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| Q |
101 |
agaaaggaaaattgcaatttggtcacgaacactaaatgctgttggttttgtg |
152 |
Q |
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| T |
26372004 |
agaaaggaaaattacaatttggtcacaaacactaaatgttgttggttttgtg |
26372055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 250 - 309
Target Start/End: Original strand, 26372123 - 26372182
Alignment:
| Q |
250 |
gtttgaaaaggtattcgattaagagaaatgatgatttagtttgtattggtgtacaacttt |
309 |
Q |
| |
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||||||||| |||||||||||||||| |||| ||||||||||||||| |||||||||||| |
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| T |
26372123 |
gtttgaaaatgtattcgattaagagagatgacgatttagtttgtattcgtgtacaacttt |
26372182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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