View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7558_low_9 (Length: 314)
Name: NF7558_low_9
Description: NF7558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7558_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 4 - 300
Target Start/End: Complemental strand, 44648948 - 44648652
Alignment:
| Q |
4 |
atcagacgtgatattatgattttattaaagctagtgtagtttttgcaaaaccacatgacacatcataattctgctaaattcatcatcaatccaaacatgc |
103 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44648948 |
atcagacgtgatactatgattttattaaagctagtgtagtttttgcaaaaccacatgacacattataattctgctaaattcatcatcaatccaaacatgc |
44648849 |
T |
|
| Q |
104 |
acgcattttcagtttataatttggttatgtatgtaaatttcatttatatttttatgtcttagttgagttattatattttatatggtggtatgaataggaa |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44648848 |
acgcattttcagtttataatttggttatgtatgtaaatttcatttatatttttatgtcttagttgagttattatattttatatggtggtatgaataggaa |
44648749 |
T |
|
| Q |
204 |
aaggagggtgtggttaggaacatttgaaacagctgaagaagcagctaaagcatatgatgaagcagcaattttgatgagtggaagaaatgcaaaaact |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44648748 |
aaggagggtgtggttaggaacatttgaaacagctgaagaagcagctaaagcatatgatgaagcagcaattttgatgagtggaagaaatgcaaaaact |
44648652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 15403641 - 15403688
Alignment:
| Q |
214 |
tggttaggaacatttgaaacagctgaagaagcagctaaagcatatgat |
261 |
Q |
| |
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|||||||| |||||||| ||||||||||||||||||| ||| |||||| |
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| T |
15403641 |
tggttaggtacatttgacacagctgaagaagcagctagagcttatgat |
15403688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 196 - 299
Target Start/End: Complemental strand, 2428749 - 2428646
Alignment:
| Q |
196 |
aataggaaaaggagggtgtggttaggaacatttgaaacagctgaagaagcagctaaagcatatgatgaagcagcaattttgatgagtggaagaaatgcaa |
295 |
Q |
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||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| | ||||||||||||||||||| |
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| T |
2428749 |
aataggaaaaggagggtttggttaggaacatttgagacagctgaagaagcagctagagcatatgatgaagcagccattctaatgagtggaagaaatgcaa |
2428650 |
T |
|
| Q |
296 |
aaac |
299 |
Q |
| |
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|||| |
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| T |
2428649 |
aaac |
2428646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 196 - 299
Target Start/End: Complemental strand, 47101423 - 47101320
Alignment:
| Q |
196 |
aataggaaaaggagggtgtggttaggaacatttgaaacagctgaagaagcagctaaagcatatgatgaagcagcaattttgatgagtggaagaaatgcaa |
295 |
Q |
| |
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|||||||| || ||||||||| ||||||||||||||||||| ||||||||||| | |||||||||| |||| || ||||| |||||||| |||||||| | |
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| T |
47101423 |
aataggaagagaagggtgtggctaggaacatttgaaacagcagaagaagcagcaagagcatatgatcaagctgcgattttaatgagtggtagaaatgcca |
47101324 |
T |
|
| Q |
296 |
aaac |
299 |
Q |
| |
|
|||| |
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|
| T |
47101323 |
aaac |
47101320 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 1726258 - 1726315
Alignment:
| Q |
214 |
tggttaggaacatttgaaacagctgaagaagcagctaaagcatatgatgaagcagcaa |
271 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||| | |||||||||||||||||||| |
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|
| T |
1726258 |
tggttaggaacatttgaaacagcagaagatgcagcaagagcatatgatgaagcagcaa |
1726315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 43490130 - 43490078
Alignment:
| Q |
214 |
tggttaggaacatttgaaacagctgaagaagcagctaaagcatatgatgaagc |
266 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||| ||||||||||||||| |
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|
| T |
43490130 |
tggttaggaacatttgaaacagctgaagcagctgctagagcatatgatgaagc |
43490078 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 280
Target Start/End: Original strand, 49532575 - 49532647
Alignment:
| Q |
208 |
agggtgtggttaggaacatttgaaacagctgaagaagcagctaaagcatatgatgaagcagcaattttgatga |
280 |
Q |
| |
|
||||||||||||||||||||||| || || |||| |||||| | |||||||||| |||| ||||||||||||| |
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|
| T |
49532575 |
agggtgtggttaggaacatttgagacggcagaagcagcagcaagagcatatgatcaagctgcaattttgatga |
49532647 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 38653206 - 38653154
Alignment:
| Q |
214 |
tggttaggaacatttgaaacagctgaagaagcagctaaagcatatgatgaagc |
266 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||| |||||| |||| |
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|
| T |
38653206 |
tggttaggtacatttgaaacagctgaagatgcagctaaagcctatgatcaagc |
38653154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 266
Target Start/End: Complemental strand, 33274316 - 33274270
Alignment:
| Q |
220 |
ggaacatttgaaacagctgaagaagcagctaaagcatatgatgaagc |
266 |
Q |
| |
|
||||||||||| |||||||| |||||||||| ||| ||||||||||| |
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| T |
33274316 |
ggaacatttgagacagctgaggaagcagctagagcttatgatgaagc |
33274270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 3160291 - 3160343
Alignment:
| Q |
214 |
tggttaggaacatttgaaacagctgaagaagcagctaaagcatatgatgaagc |
266 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| || | ||| ||||||||||| |
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|
| T |
3160291 |
tggttaggaacttttgatacagctgaagaagctgcaagagcctatgatgaagc |
3160343 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 266
Target Start/End: Original strand, 10030004 - 10030050
Alignment:
| Q |
220 |
ggaacatttgaaacagctgaagaagcagctaaagcatatgatgaagc |
266 |
Q |
| |
|
|||||||||||||||||||| |||||||| | ||| ||||||||||| |
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| T |
10030004 |
ggaacatttgaaacagctgaggaagcagcaagagcttatgatgaagc |
10030050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 4038759 - 4038808
Alignment:
| Q |
214 |
tggttaggaacatttgaaacagctgaagaagcagctaaagcatatgatga |
263 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| |||| ||| |||||||| |
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|
| T |
4038759 |
tggttaggaacttttgatacagctgaagaagctgctagagcttatgatga |
4038808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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