View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7559_high_10 (Length: 392)
Name: NF7559_high_10
Description: NF7559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7559_high_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 19 - 379
Target Start/End: Original strand, 24562154 - 24562513
Alignment:
| Q |
19 |
aatccttgcttgccatcttccatgttggtgatgcctgaagatcgtcatagaataaaaacaatagtattaatcataagcaaaagcacagtggaagaaaatc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||| |
|
|
| T |
24562154 |
aatccttgcttgccatcttccatgttggtgatgcctgaagatcgtcatagaataaaaacaatattattaatcataagcaaaagcacagagaaagaaaatc |
24562253 |
T |
|
| Q |
119 |
actaaagttagatgattaaaattaagaaaaattaatgggatccaatattacaccttgtaactccacggtacattgatgcaccccttgagaaaccgctgct |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
24562254 |
actaaagttagatgattaaaattaagaaaaattaatgtgatccaatattacaccttgtaactccacggtacattgatgcacccctagagaaaccgctgct |
24562353 |
T |
|
| Q |
219 |
tttcctgcatttaattcaaccaaatttataagttcaaaacctagataagcttttactttgaagattgactcttattataaccatttattaatggacttgg |
318 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
24562354 |
tttcctgcatttaattcaacaatatttataagttcaaaacctagataagc-tttactttgaagattgactcttattattaccatttattaatggacttag |
24562452 |
T |
|
| Q |
319 |
aaaagcataaattaattaccttctaatagaggcaacaaattcttgtcttgtcatgtgcttc |
379 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24562453 |
aaaagcataaattagttaccttctaatagaggcaacaaattcttgtcttgtcatgtgcttc |
24562513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 327 - 379
Target Start/End: Original strand, 41964654 - 41964706
Alignment:
| Q |
327 |
aaattaattaccttctaatagaggcaacaaattcttgtcttgtcatgtgcttc |
379 |
Q |
| |
|
|||||||||||||||| || | ||||||||||||| ||||||||||||||||| |
|
|
| T |
41964654 |
aaattaattaccttcttatggcggcaacaaattctagtcttgtcatgtgcttc |
41964706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 54
Target Start/End: Original strand, 41964259 - 41964290
Alignment:
| Q |
23 |
cttgcttgccatcttccatgttggtgatgcct |
54 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
41964259 |
cttgcttgccatcttccatgttggtgatgcct |
41964290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 227
Target Start/End: Original strand, 41964423 - 41964480
Alignment:
| Q |
170 |
accttgtaactccacggtacattgatgcaccccttgagaaaccgctgcttttcctgca |
227 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||| || || ||||| || ||||| |
|
|
| T |
41964423 |
accttgtgactccacgatacattgatgcaccccttgaaaatccactgctctttctgca |
41964480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University