View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7559_high_11 (Length: 365)
Name: NF7559_high_11
Description: NF7559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7559_high_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 3 - 354
Target Start/End: Complemental strand, 7497629 - 7497294
Alignment:
| Q |
3 |
tgtctagcctaaaaatagtgatcttaaactttaaggactagtccttataaggtcctgaattcgaactcatgtgaacatgagtaggtgtctagcctaagaa |
102 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7497629 |
tgtctagcctcaaaatagtgatcttagactttaaggactggtccttataagatcctgaattcgaactcatgtgaacatgagtaggtgtctagcctaagaa |
7497530 |
T |
|
| Q |
103 |
tagtgatcttaggcttttaaggactagtccttaataatatctcactacactatatatgctgaaatatttaacaagtgaagaaataacaaagtattatact |
202 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
7497529 |
tagtgatctcaggcttt-aaggactagtccttaataatatctcactacactatatatgctc--------------tgaa-aaataacaaagtattatact |
7497446 |
T |
|
| Q |
203 |
aaacttccttagttaaaataattttataaattccaatgatacctgtatgaacataaaagaccatagctgcatgtagaagcacaggaagaaacacagagtt |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7497445 |
aaacttccttagttaaaataattttataaattccaatgatacctgtatgaacataaaagagcatagctgcatgtagaagcacaggaagaaacacagagtt |
7497346 |
T |
|
| Q |
303 |
aggttccaatgtaaagaactctatatgatagtgttgtgcgtgatgtccatct |
354 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| || |||||||||| |
|
|
| T |
7497345 |
aggttccaatgtaaagaactcaatatgatagtgttgtgtgttatgtccatct |
7497294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University