View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7559_high_13 (Length: 348)
Name: NF7559_high_13
Description: NF7559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7559_high_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 331
Target Start/End: Original strand, 30238224 - 30238544
Alignment:
| Q |
13 |
aatattatcttcattgtagcaacttccatcaccaaaagggtcacaattattattatnnnnnnnnnnnnnnnacttgctaatttgtgaagttgttgcactg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30238224 |
aatattatcttcattgtagcaacttccatcaccaaaagggtcacaattattattatcacacacacaacacaacttgctaatttgtgaagttgttgcactg |
30238323 |
T |
|
| Q |
113 |
ctgttttggtatcattcagtgattgtgctagtgcttttctttcataataagctcgaatctgattacaaattcaatgaccattaattaatttgataaataa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30238324 |
ctgttttggtatcattcagtgattgtgctagtgcttttctttcataataagctcgaatctgattacaaattcaatgaccattaattaatttgataaataa |
30238423 |
T |
|
| Q |
213 |
ctattgt--nnnnnnnngtgacacaaattgatattcacaagtgataaattttcaagcaagacttaccacccaatttctaaaggaagatctgctaatcttc |
310 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30238424 |
ctattgtaataaaaaaagtgacacaaattgatattcacaagtgataaattttcaagcaagacttaccacccaatttctaaaggaagatctgctaatcttc |
30238523 |
T |
|
| Q |
311 |
ccagtttcaagagcaccttca |
331 |
Q |
| |
|
||||||||||| ||||||||| |
|
|
| T |
30238524 |
ccagtttcaagggcaccttca |
30238544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University