View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7559_high_18 (Length: 278)
Name: NF7559_high_18
Description: NF7559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7559_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 262
Target Start/End: Original strand, 45685528 - 45685774
Alignment:
| Q |
16 |
atccaataccaatgtgagctgcatcaattaaataactcaaagcatttgttcacaagcaaaaatctaaattatggtctgagtcctcttggactatccaatc |
115 |
Q |
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| T |
45685528 |
atccaataccaatgtgagctgcatcaattaaataactcaaagcatttgttcacaagcaaaaatctaaattatggtctgagtcctcttggactatccaatc |
45685627 |
T |
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| Q |
116 |
ctccgatcacagaacccacctggtttaaggtcaaagttccagttttatcactgcaaattgtcgtagcagagcccatggtttcgcaggctgatagccttcg |
215 |
Q |
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| T |
45685628 |
ctccgatcacagaacccacctggtttaaggtcaaagttccagttttatcactgcaaattgtcgtagcagagcccatggtttcgcaggctgatagccttcg |
45685727 |
T |
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| Q |
216 |
cacctgtatcattgttaggaaatgtttcaacggaaaatatcgcaaat |
262 |
Q |
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| T |
45685728 |
cacctgtatcattgttaggaaatgtttcaacggaaaatatcgcaaat |
45685774 |
T |
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Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 134 - 221
Target Start/End: Complemental strand, 1441064 - 1440977
Alignment:
| Q |
134 |
cctggtttaaggtcaaagttccagttttatcactgcaaattgtcgtagcagagcccatggtttcgcaggctgatagccttcgcacctg |
221 |
Q |
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| T |
1441064 |
cctgatttaacgtcaatgttcctgtcttatcactgcaaattgttgtagcagagcccatagtttcacaggctgacagccttcgcacctg |
1440977 |
T |
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