View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7559_high_2 (Length: 599)
Name: NF7559_high_2
Description: NF7559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7559_high_2 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 17 - 458
Target Start/End: Original strand, 17318288 - 17318729
Alignment:
| Q |
17 |
aaaaataaaactgaagaaaatgatcagcaccatcaaacggatcagccccagagaccccaatccaagcacgaactatatacaataagtctctgaatataga |
116 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17318288 |
aaaaataaaattgaagaaaatgatcagcaccatcaaacggatcagccccagagaccccaatccaagcacgaactatatacaataagtctctgaatataga |
17318387 |
T |
|
| Q |
117 |
acatgagaaaaattaatggttagctgtttccacttcaccgcacccggtcacacacatttgcacctcttgagagatgatcccacaagccacaagattcgct |
216 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
17318388 |
acatgagaaaaataaatggttagttgtttccacttcaccgcacccggtcacacacatttgcacctcttgagagatgatcccacgagccacaagattcgct |
17318487 |
T |
|
| Q |
217 |
atggttggtaaactgttacagagaagtctccaaacaagaatagacaccttaatggggacatgtctgtgccaaatcatatatgaaactgcgtccacaacat |
316 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17318488 |
atggttggtaaactgttacggagaagtctccaaacaagaatagacaccttaatggggacatgtctgtgccaaatcatatccgaaactgcgtccacaacat |
17318587 |
T |
|
| Q |
317 |
gactgacatttgttgtgagcatatggtaagcgctacacacagagtaagcacgactatcctcaagcctccacctccactgatcagagagctaaacctacaa |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| | ||||| ||| |
|
|
| T |
17318588 |
gactgacatttgttgtgagcatatggtaagcgctacgcacagagtgagcaccgctatcctcaagcctccacctccactgatcagagagttgaacctgcaa |
17318687 |
T |
|
| Q |
417 |
agtaacatcatacaagaacaacctacactcccctaatagctt |
458 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
17318688 |
agtaacatcagacaagaacaacctacactcccctaatagctt |
17318729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 55 - 292
Target Start/End: Original strand, 22437079 - 22437316
Alignment:
| Q |
55 |
ggatcagccccagagaccccaatccaagcacgaactatatacaataagtctctgaatatagaacatgagaaaaattaatggttagctgtttccacttcac |
154 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||| | | | |||| ||||||||||| | || || | |||| |||| | ||||||||||||||| | |
|
|
| T |
22437079 |
ggatcagccccagagactccaatccaatcacgaacaaggtgccataactctctgaatatggtgcaagaaacaaataaatgttgagctgtttccacttctc |
22437178 |
T |
|
| Q |
155 |
cgcacccggtcacacacatttgcacctcttgagagatgatcccacaagccacaagattcgctatggttggtaaactgttacagagaagtctccaaacaag |
254 |
Q |
| |
|
|||||||||| |||||||| || |||| ||||| |||||||||||||||||||||||| | ||||| || |||||||||||||||| | ||||||| |
|
|
| T |
22437179 |
cgcacccggtgacacacatatgagcctcctgagaaggaatcccacaagccacaagattcgctctagttggcaacctgttacagagaagtcgctaaacaag |
22437278 |
T |
|
| Q |
255 |
aatagacaccttaatggggacatgtctgtgccaaatca |
292 |
Q |
| |
|
| | |||||| || |||||||||||||||||||||| |
|
|
| T |
22437279 |
taaaaccacctttattgggacatgtctgtgccaaatca |
22437316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 514 - 592
Target Start/End: Original strand, 17318785 - 17318862
Alignment:
| Q |
514 |
agccagactcaaacatatccctcaccgacaccaacttattgacacttaactcatacaaccgtctaaaccgcaccaccaa |
592 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
17318785 |
agccagactcaaacatatccc-caccgacaccaacttattgacatttaactcatacaaccgtctaaaccgcaccgccaa |
17318862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 549 - 592
Target Start/End: Original strand, 22238678 - 22238721
Alignment:
| Q |
549 |
ttattgacacttaactcatacaaccgtctaaaccgcaccaccaa |
592 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||| |||| |
|
|
| T |
22238678 |
ttattgacacttaactcatacaagcgcctaaaccgcaccgccaa |
22238721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 549 - 592
Target Start/End: Original strand, 22437571 - 22437614
Alignment:
| Q |
549 |
ttattgacacttaactcatacaaccgtctaaaccgcaccaccaa |
592 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
22437571 |
ttattgacacttaactcatacaagtgtctaaacctcaccaccaa |
22437614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 8e-75; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 23 - 457
Target Start/End: Original strand, 30434879 - 30435315
Alignment:
| Q |
23 |
aaaactgaagaaaatgatcagcaccatcaaacggatcagccccagagaccccaatccaagcacgaactatatacaataagtctctgaatatagaacatga |
122 |
Q |
| |
|
||||||| |||||||| |||| |||||||||| |||||| | |||||||||||||||| |||||||| | |||| || ||||| ||| ||| || |
|
|
| T |
30434879 |
aaaactggagaaaatggtcaggaccatcaaacaaatcagcactagagaccccaatccaatgacgaactaattgtcataactcactgaaaatatgacaaga |
30434978 |
T |
|
| Q |
123 |
gaaaaattaatggttagctgtttccacttcaccgcacccggtcacacacatttgcacctcttgagagatgatcccacaagccacaagattcgctatggtt |
222 |
Q |
| |
|
||||| |||| |||| ||||||||| ||||||| ||| ||||||||||| ||| |||| |||||| ||||||| |||||||||||||||| ||||| |
|
|
| T |
30434979 |
aaaaaa--aatgattagttgtttccacatcaccgctccccgtcacacacatatgcgcctccagagagaggatcccatgagccacaagattcgctttggtt |
30435076 |
T |
|
| Q |
223 |
ggtaaactgttacagagaagtctccaaacaagaatagacaccttaatggggacatgtctgtgccaaatcatatatgaaactgcgtccacaacatgactga |
322 |
Q |
| |
|
|| || ||| | | ||||||||||||| ||| ||||||||||||||| |||||||||| ||||| ||| ||| ||| || | || |||||| |||||| |
|
|
| T |
30435077 |
ggcaacctgatgcggagaagtctccaagcaaaaatagacaccttaattgggacatgtcgatgccatatcgtatctgataccgtgttcacaacctgactgt |
30435176 |
T |
|
| Q |
323 |
catttgttgtgagcatat----ggtaagcgctacacacagagtaagcacgactatcctcaagcctccacctccactgatcagagagctaaacctacaaag |
418 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||||| ||| | |||||||||||||||||||||||||||||||||| | ||||| ||||| |
|
|
| T |
30435177 |
catttgttgtgagcatatggccggtaagcgctacgcacagagtatacaccattatcctcaagcctccacctccactgatcagagagttgaacctgcaaag |
30435276 |
T |
|
| Q |
419 |
taacatcatacaagaacaacctacactcccctaatagct |
457 |
Q |
| |
|
||| |||| | || |||| ||||||||||||||| |||| |
|
|
| T |
30435277 |
taaaatcagataacaacagcctacactcccctaacagct |
30435315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 53 - 266
Target Start/End: Complemental strand, 13797754 - 13797541
Alignment:
| Q |
53 |
acggatcagccccagagaccccaatccaagcacgaactatatacaataagtctctgaatatagaacatgagaaaaattaatggttagctgtttccacttc |
152 |
Q |
| |
|
||||| |||||||| |||||| ||||||| ||| ||||| || | |||| ||||||||||| | ||| ||||| ||| |||| | || |||||||||| |
|
|
| T |
13797754 |
acggagcagccccatagaccctaatccaatcacaaactaaatgccataactctctgaatatggtacaagagaagaataaatgttgcgccgtttccacttt |
13797655 |
T |
|
| Q |
153 |
accgcacccggtcacacacatttgcacctcttgagagatgatcccacaagccacaagattcgctatggttggtaaactgttacagagaagtctccaaaca |
252 |
Q |
| |
|
|||||||| ||||| ||||| || |||| ||||||| |||||||| |||| | |||||| | ||||||| || ||||||| |||||||||||| || |
|
|
| T |
13797654 |
tccgcacccagtcacgcacatctgagcctcctgagagaggatcccacgagcccccagattctccttggttggcaacctgttacggagaagtctccatacg |
13797555 |
T |
|
| Q |
253 |
agaatagacacctt |
266 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
13797554 |
agaatagacacctt |
13797541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 545 - 585
Target Start/End: Original strand, 30435394 - 30435434
Alignment:
| Q |
545 |
caacttattgacacttaactcatacaaccgtctaaaccgca |
585 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30435394 |
caacttattgacacttaactcatacaagcgtctaaaccgca |
30435434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 141; Significance: 1e-73; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 40 - 445
Target Start/End: Original strand, 18714440 - 18714836
Alignment:
| Q |
40 |
tcagcaccatcaaacggatcagccccagagaccccaatccaagcacgaactatatacaataagtctctgaatatagaacatgagaaaaattaatggttag |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| || ||||| || | | ||||| |||| ||| || ||||| || | ||| |
|
|
| T |
18714440 |
tcagcaccatcaaacggatcagccccagagaccacaatccaacgacaaactaaatgcca-------ctgaaaatagtacaagaaaaaaa--aaagattaa |
18714530 |
T |
|
| Q |
140 |
ctgtttccacttcaccgcacccggtcacacacatttgcacctcttgagagatgatcccacaagccacaagattcgctatggttggtaaactgttacagag |
239 |
Q |
| |
|
|| |||||||||||||||| |||||||||||||||||| |||| ||||||| ||||||| |||||||||||||||| ||||||| || ||||| | ||| |
|
|
| T |
18714531 |
ctttttccacttcaccgcagccggtcacacacatttgcgcctcctgagagagaatcccacgagccacaagattcgctttggttggcaacctgttgcggag |
18714630 |
T |
|
| Q |
240 |
aagtctccaaacaagaatagacaccttaatggggacatgtctgtgccaaatcatatatgaaactgcgtccacaacatgactgacatttgttgtgagcata |
339 |
Q |
| |
|
|||||||||| || |||||||||||||| |||||||||| |||||| ||||||| ||| || | | |||||| |||||| ||| || |||||||||| |
|
|
| T |
18714631 |
aagtctccaagaaaaaatagacaccttaactgggacatgtcggtgccatatcatatctgataccacattcacaacctgactgtcatctgatgtgagcata |
18714730 |
T |
|
| Q |
340 |
tggtaagcgctacacacagagtaagcacgactatcctcaagcctccacctccactgatcagagagctaaacctacaaagtaacatcatacaagaacaacc |
439 |
Q |
| |
|
||||||| ||||| |||||||||| || ||||||||||||||| |||||||||||||||||||||| ||| | | ||||||||||| | || |||| || |
|
|
| T |
18714731 |
tggtaagtgctacgcacagagtaaacatcactatcctcaagccttcacctccactgatcagagagctgaacttgccaagtaacatcagataacaacagcc |
18714830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 196 - 454
Target Start/End: Original strand, 45272502 - 45272760
Alignment:
| Q |
196 |
ccacaagccacaagattcgctatggttggtaaactgttacagagaagtctccaaacaagaatagacaccttaatggggacatgtctgtgccaaatcatat |
295 |
Q |
| |
|
|||| ||||| ||||||||| ||||||| || ||||||| ||||||||||||| |||||||||| |||| | |||||| |||||||||||| || |
|
|
| T |
45272502 |
ccacgagccataagattcgccttggttggcaacctgttacggagaagtctccaagcaagaatagatgcctttaccaaaacatgtttgtgccaaatcaaat |
45272601 |
T |
|
| Q |
296 |
atgaaactgcgtccacaacatgactgacatttgttgtgagcatatggtaagcgctacacacagagtaagcacgactatcctcaagcctccacctccactg |
395 |
Q |
| |
|
||||| ||||||||||| |||||| ||| ||||||||||||||| ||| | | || || |||||| ||| ||| ||| | | ||| |||||||| |
|
|
| T |
45272602 |
ctgaaattgcgtccacaatatgactaccatctgttgtgagcatatgataaacattgcagacggagtaaacaccacttgtatcatgtcgccagctccactg |
45272701 |
T |
|
| Q |
396 |
atcagagagctaaacctacaaagtaacatcatacaagaacaacctacactcccctaata |
454 |
Q |
| |
|
||||||| || ||||| ||||||||||||| |||| |||||||||||||| ||||||| |
|
|
| T |
45272702 |
atcagaggtctgaacctgcaaagtaacatcaaacaacaacaacctacactctcctaata |
45272760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 19081597 - 19081665
Alignment:
| Q |
23 |
aaaactgaagaaaatgatcagcaccatcaaacggatcagccccagagaccccaatccaagcacgaacta |
91 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||| |||| |||||||||||||| || |||||| |
|
|
| T |
19081597 |
aaaactaaagaaagtgatcagcaccatcaaacggatcaggcccacagaccccaatccaatcaagaacta |
19081665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 142 - 341
Target Start/End: Complemental strand, 37049117 - 37048918
Alignment:
| Q |
142 |
gtttccacttcaccgcacccggtcacacacatttgcacctcttgagagatgatcccacaagccacaagattcgctatggttggtaaactgttacagagaa |
241 |
Q |
| |
|
|||||||| |||| |||||| ||||||||||| || |||| ||||||||||| ||| |||||||||||| | | |||| ||||| | ||| | || || |
|
|
| T |
37049117 |
gtttccacctcactgcacccagtcacacacatctgagcctcctgagagatgatatcacgagccacaagatttgatttggtgggtaatcagttgcggaaaa |
37049018 |
T |
|
| Q |
242 |
gtctccaaacaagaatagacaccttaatggggacatgtctgtgccaaatcatatatgaaactgcgtccacaacatgactgacatttgttgtgagcatatg |
341 |
Q |
| |
|
||| ||| || | | ||||||||| | ||||||||| |||||||||||| | |||||| ||||||| || |||||| ||| ||| ||||||||||| |
|
|
| T |
37049017 |
gtcaccacgcagggagagacacctttaccgggacatgtatgtgccaaatcaattttgaaaccgcgtccaacacctgactgtcatctgtagtgagcatatg |
37048918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 545 - 592
Target Start/End: Original strand, 18714936 - 18714983
Alignment:
| Q |
545 |
caacttattgacacttaactcatacaaccgtctaaaccgcaccaccaa |
592 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
18714936 |
caacttattgacacttaactcatacaagcgtctaaactgcaccaccaa |
18714983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 43689438 - 43689368
Alignment:
| Q |
142 |
gtttccacttcaccgcacccggtcacacacatttgcacctcttgagagatgatcccacaagccacaagatt |
212 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||| |||| |||||||||||||| | ||||| |||||| |
|
|
| T |
43689438 |
gtttccacttcaccgcacccagccacacacatttgtgcctcatgagagatgatcccgcgagccagaagatt |
43689368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 32 - 292
Target Start/End: Complemental strand, 34948254 - 34947994
Alignment:
| Q |
32 |
gaaaatgatcagcaccatcaaacggatcagccccagagaccccaatccaagcacgaactatatacaataagtctctgaatatagaacatgagaaaaatta |
131 |
Q |
| |
|
||||||| |||||| ||| ||||||||||||||||||||||||| ||| ||||||| | || |||| |||||||| || | || || | ||| | |
|
|
| T |
34948254 |
gaaaatggtcagcaatgtcatacggatcagccccagagaccccaattcaatcacgaacaagatgtcataactctctgaagatggtgcaagaaatgaataa |
34948155 |
T |
|
| Q |
132 |
atggttagctgtttccacttcaccgcacccggtcacacacatttgcacctcttgagagatgatcccacaagccacaagattcgctatggttggtaaactg |
231 |
Q |
| |
|
||| | || |||||||||||| | ||||||||||| ||||| || ||| ||||| || |||||| ||| |||||||||||| | |||||||| ||| |
|
|
| T |
34948154 |
atgttgagttgtttccacttctcaacacccggtcacgcacatctgattctcctgagaaataatcccatgagctacaagattcgcttttgttggtaatctg |
34948055 |
T |
|
| Q |
232 |
ttacagagaagtctccaaacaagaatagacaccttaatggggacatgtctgtgccaaatca |
292 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| | ||||||||| |||||||||||| |
|
|
| T |
34948054 |
ttacagagaagttgtcaaacaagaatagacaccttgaacgggacatgtttgtgccaaatca |
34947994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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