View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7559_high_21 (Length: 252)
Name: NF7559_high_21
Description: NF7559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7559_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 45758879 - 45758633
Alignment:
| Q |
1 |
caatttagagtttagagcacaaagtttaactcttggggttgcttaaatatctgcatttgatttctcatgccaatgatccttaccgaaactcttaaaacga |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
45758879 |
caatttagagtttagagcacaaagtttaactcttgaggttgcttaaatatctgcatttgatttctcatgccaatgatccttacccaaactcttaaaatga |
45758780 |
T |
|
| Q |
101 |
tgaaaaaagatcaaaataaatcatgactcactttt-----ttttaataaagtacactaaattgttcagtcttcacaaaag--nnnnnnnnnnnnnnnnaa |
193 |
Q |
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|
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| | |
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| T |
45758779 |
tgaaaaaagatcaaaataaatcatgactcactttttttttttttaatgaagtacactaaattgttcagtcttcacaaaagttttttttttttttttttat |
45758680 |
T |
|
| Q |
194 |
gtaaccttcacaaaaaatttcttggtcatatttctcaaccatatatt |
240 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45758679 |
gtaaccttcacaaaaaatttcttggtcatatttctcaaccatatatt |
45758633 |
T |
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