View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7559_high_25 (Length: 240)

Name: NF7559_high_25
Description: NF7559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7559_high_25
NF7559_high_25
[»] chr2 (2 HSPs)
chr2 (1-223)||(10940226-10940459)
chr2 (1-223)||(10946095-10946328)
[»] chr1 (1 HSPs)
chr1 (1-223)||(49389708-49389941)
[»] chr7 (1 HSPs)
chr7 (2-223)||(13816852-13817084)
[»] chr6 (1 HSPs)
chr6 (1-223)||(24043755-24043988)
[»] chr4 (1 HSPs)
chr4 (163-223)||(6662829-6662889)


Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 10940226 - 10940459
Alignment:
Q  1 caacaaggataaatcaatgtctctacatcaaccagaacaaagaa-----------agaagaataagacattttcgaaaactggagttcaaaataatcata 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||    
T  10940226 caacaaggataaatcaatgtctctacatcaaccagaacaaagaataatacaacaaagaagaataagacattttcgaaaactggagttcaaaataatcata 10940325  T
Q  90 atcaaacaaacatgtggttaattaacatttttgcatcacttttctatatgcatatttcatcacagtaagtctttttcaaatcaagcaagacatcaatttt 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10940326 atcaaacaaacatgtggttaattaacatttttgcatcacttttctatatgcatatttcatcacagtaagtctttttcaaatcaagcaagacattaatttt 10940425  T
Q  190 caacatcattaaaaatattatgcaagctcaaaca 223  Q
    ||||||||||||||||||||||||||||||||||    
T  10940426 caacatcattaaaaatattatgcaagctcaaaca 10940459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 10946095 - 10946328
Alignment:
Q  1 caacaaggataaatcaatgtctctacatcaaccagaacaaagaa-----------agaagaataagacattttcgaaaactggagttcaaaataatcata 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||| ||||||||||||||||||||||    
T  10946095 caacaaggataaatcaatgtctctacatcaaccagaacaaagaataatacaacaaagaagaataagacattttcgaatactggagttcaaaataatcata 10946194  T
Q  90 atcaaacaaacatgtggttaattaacatttttgcatcacttttctatatgcatatttcatcacagtaagtctttttcaaatcaagcaagacatcaatttt 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10946195 atcaaacaaacatgtggttaattaacatttttgcatcacttttctatatgcatatttcatcacagtaagtctttttcaaatcaagcaagacattaatttt 10946294  T
Q  190 caacatcattaaaaatattatgcaagctcaaaca 223  Q
    ||||||||||||||||||||||||||||||||||    
T  10946295 caacatcattaaaaatattatgcaagctcaaaca 10946328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 49389708 - 49389941
Alignment:
Q  1 caacaaggataaatcaatgtctctacatcaaccagaacaaagaa-----------agaagaataagacattttcgaaaactggagttcaaaataatcata 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||    
T  49389708 caacaaggataaatcaatgtctctacatcaaccagaacaaagaataatacaacaaagaagaataagacattttcgaaaactggagttcaaaataatcata 49389807  T
Q  90 atcaaacaaacatgtggttaattaacatttttgcatcacttttctatatgcatatttcatcacagtaagtctttttcaaatcaagcaagacatcaatttt 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  49389808 atcaaacaaacatgtggttaattaacatttttgcatcacttttctatatgcatatttcatcacagtaagtctttttcaaatcaagcaagacattaatttt 49389907  T
Q  190 caacatcattaaaaatattatgcaagctcaaaca 223  Q
    ||||||||||||||||||||||||||||||||||    
T  49389908 caacatcattaaaaatattatgcaagctcaaaca 49389941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 13817084 - 13816852
Alignment:
Q  2 aacaaggataaatcaatgtctctacatcaaccagaacaaagaa-----------agaagaataagacattttcgaaaactggagttcaaaataatcataa 90  Q
    |||||||||||||||||||||||||||||||||||||||||||           |||||||| |||||||||| ||||||||||||||||||||||||||    
T  13817084 aacaaggataaatcaatgtctctacatcaaccagaacaaagaataatacaacaaagaagaattagacattttcaaaaactggagttcaaaataatcataa 13816985  T
Q  91 tcaaacaaacatgtggttaattaacatttttgcatcacttttctatatgcatatttcatcacagtaagtctttttcaaatcaagcaagacatcaattttc 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13816984 tcaaacaaacatgtggttaattaacatttttgcatcacttttctatatgcatatttcatcacagtaagtctttttcaaatcaagcaagacatcaattttc 13816885  T
Q  191 aacatcattaaaaatattatgcaagctcaaaca 223  Q
    ||||||||||||||||||||||||||| |||||    
T  13816884 aacatcattaaaaatattatgcaagcttaaaca 13816852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 24043755 - 24043988
Alignment:
Q  1 caacaaggataaatcaatgtctctacatcaaccagaacaaagaa-----------agaagaataagacattttcgaaaactggagttcaaaataatcata 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||    
T  24043755 caacaaggataaatcaatgtctctacatcaaccagaacaaagaataatacaacaaagaagaataagacattttcgaaaactggagttcaaaataatcata 24043854  T
Q  90 atcaaacaaacatgtggttaattaacatttttgcatcacttttctatatgcatatttcatcacagtaagtctttttcaaatcaagcaagacatcaatttt 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||    
T  24043855 atcaaacaaacatgtggttaattaacatttttgcatcacttttctatatgcatatttcatcacattaagtcttttccaattcaagcaagacatcaatttt 24043954  T
Q  190 caacatcattaaaaatattatgcaagctcaaaca 223  Q
    | |||||||||||||||||| ||||||| |||||    
T  24043955 cgacatcattaaaaatattacgcaagcttaaaca 24043988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 6662829 - 6662889
Alignment:
Q  163 tttcaaatcaagcaagacatcaattttcaacatcattaaaaatattatgcaagctcaaaca 223  Q
    |||| ||| ||||||| ||| |||||||||||| | ||| ||||| |||||||||||||||    
T  6662829 tttccaattaagcaagtcatgaattttcaacatgactaagaatatcatgcaagctcaaaca 6662889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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