View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7559_high_27 (Length: 206)

Name: NF7559_high_27
Description: NF7559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7559_high_27
NF7559_high_27
[»] chr5 (8 HSPs)
chr5 (17-192)||(1739518-1739693)
chr5 (78-192)||(1739347-1739461)
chr5 (78-192)||(1744690-1744804)
chr5 (17-192)||(1744855-1745030)
chr5 (17-177)||(1725184-1725338)
chr5 (35-124)||(1715615-1715704)
chr5 (93-187)||(1724763-1724857)
chr5 (83-187)||(1724901-1725005)
[»] chr3 (4 HSPs)
chr3 (17-134)||(3167618-3167735)
chr3 (17-114)||(3156556-3156653)
chr3 (17-190)||(2023129-2023302)
chr3 (19-127)||(3138826-3138934)
[»] chr7 (3 HSPs)
chr7 (34-127)||(7490840-7490933)
chr7 (33-127)||(7484085-7484179)
chr7 (79-127)||(9011746-9011794)
[»] chr8 (1 HSPs)
chr8 (17-114)||(23852503-23852603)


Alignment Details
Target: chr5 (Bit Score: 124; Significance: 6e-64; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 1739693 - 1739518
Alignment:
Q  17 acttgtagcaacatttgtagaagaatctccagattttataatagcaccaatcttgtcattcgtaccatcttcaatccttgaagtagttgaaccaccaaat 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||    
T  1739693 acttgtagcaacatttgtagaagaatctccagattttataatagcaccaatcttgtcattcgtaccatcttcaatcctcgaagcagttgcaccaccaaat 1739594  T
Q  117 cctagaattcccaccccacggttactattactactctccatgtttctcaaaccaacaagagaaggatttaatatat 192  Q
    |||||||||||  ||||||  |||||||| |||| |||||| |||||||||| |||||| ||||| ||||||||||    
T  1739593 cctagaattccagccccactattactattgctaccctccatatttctcaaactaacaagcgaagggtttaatatat 1739518  T

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Target: chr5; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 78 - 192
Target Start/End: Complemental strand, 1739461 - 1739347
Alignment:
Q  78 gtaccatcttcaatccttgaagtagttgaaccaccaaatcctagaattcccaccccacggttactattactactctccatgtttctcaaaccaacaagag 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1739461 gtaccatcttcaatccttgaagtagttgaaccaccaaatcctagaattcccaccccacggttactattactactctccatgtttctcaaaccaacaagag 1739362  T
Q  178 aaggatttaatatat 192  Q
    |||||||||||||||    
T  1739361 aaggatttaatatat 1739347  T

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Target: chr5; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 78 - 192
Target Start/End: Complemental strand, 1744804 - 1744690
Alignment:
Q  78 gtaccatcttcaatccttgaagtagttgaaccaccaaatcctagaattcccaccccacggttactattactactctccatgtttctcaaaccaacaagag 177  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| || |||||    
T  1744804 gtaccatcttcaatccttgaagtaattgcaccaccaaatcctagaattcctaccccacgattactattactactctccatgtttctcaaactaataagag 1744705  T
Q  178 aaggatttaatatat 192  Q
    |||||||||||||||    
T  1744704 aaggatttaatatat 1744690  T

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Target: chr5; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 1745030 - 1744855
Alignment:
Q  17 acttgtagcaacatttgtagaagaatctccagattttataatagcaccaatcttgtcattcgtaccatcttcaatccttgaagtagttgaaccaccaaat 116  Q
    |||||| |||||||||||||||||||||||| ||||  |||||||||||||||||| |||| ||||||||||||||||||||| ||||| ||||||||||    
T  1745030 acttgtggcaacatttgtagaagaatctccaaatttagtaatagcaccaatcttgttattcataccatcttcaatccttgaagcagttgcaccaccaaat 1744931  T
Q  117 cctagaattcccaccccacggttactattactactctccatgtttctcaaaccaacaagagaaggatttaatatat 192  Q
    |||| ||||||   |||||  |||||||| |||| || | | |||||||||| || ||| ||||| ||||||||||    
T  1744930 cctaaaattccagtcccactattactattgctacccttcgtatttctcaaactaaaaagtgaagggtttaatatat 1744855  T

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Target: chr5; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 17 - 177
Target Start/End: Complemental strand, 1725338 - 1725184
Alignment:
Q  17 acttgtagcaacatttgtagaagaatctccagattttataatagcaccaatcttgtcattcgtaccatcttcaatccttgaagtagttgaaccaccaaat 116  Q
    |||||||||||||| | |||||||||||||  |||| | |||||||||||| || | ||| ||  |||||||||||||||||||||||  ||||||||      
T  1725338 acttgtagcaacatgtttagaagaatctccccatttaaaaatagcaccaattttattatttgtgtcatcttcaatccttgaagtagttccaccaccaata 1725239  T
Q  117 cctagaattcccaccccacggttactattactactctccatgtttctcaaaccaacaagag 177  Q
    |||||||||||  ||||      | ||| |||||||||||| |||||||||| ||||||||    
T  1725238 cctagaattccagcccc------attataactactctccatatttctcaaactaacaagag 1725184  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 1715615 - 1715704
Alignment:
Q  35 agaagaatctccagattttataatagcaccaatcttgtcattcgtaccatcttcaatccttgaagtagttgaaccaccaaatcctagaat 124  Q
    ||||||||||||| ||||||||| | | ||||| |||| ||| ||||||||||||||| ||||| || ||| ||| ||||||||||||||    
T  1715615 agaagaatctccaaattttataagaactccaattttgttattggtaccatcttcaatctttgaaataattgcacccccaaatcctagaat 1715704  T

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Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 187
Target Start/End: Complemental strand, 1724857 - 1724763
Alignment:
Q  93 cttgaagtagttgaaccaccaaatcctagaattcccaccccacggttactattactactctccatgtttctcaaaccaacaagagaaggatttaa 187  Q
    ||||||||||||  ||||||||  |||||||| || || ||||  ||| ||||||||| |||||| |||||||||| |||||||||||| |||||    
T  1724857 cttgaagtagttccaccaccaatacctagaatcccaactccactattattattactaccctccatatttctcaaactaacaagagaagggtttaa 1724763  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 187
Target Start/End: Complemental strand, 1725005 - 1724901
Alignment:
Q  83 atcttcaatccttgaagtagttgaaccaccaaatcctagaattcccaccccacggttactattactactctccatgtttctcaaaccaacaagagaagga 182  Q
    ||||||||||||||||| ||||  ||||||||  |||||||  || || ||||   |||||||||||| |||||| ||| |||||| ||||| ||||||     
T  1725005 atcttcaatccttgaagcagttccaccaccaatacctagaaccccaactccactagtactattactaccctccatatttttcaaactaacaaaagaaggg 1724906  T
Q  183 tttaa 187  Q
    |||||    
T  1724905 tttaa 1724901  T

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Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 3167735 - 3167618
Alignment:
Q  17 acttgtagcaacatttgtagaagaatctccagattttataatagcaccaatcttgtcattcgtaccatcttcaatccttgaagtagttgaaccaccaaat 116  Q
    ||||||||||||||||||||||||||||||  |||||| |||||||||||| || | ||| ||||||||||| |||||||||||| ||| ||||||||      
T  3167735 acttgtagcaacatttgtagaagaatctcctaattttagaatagcaccaattttattatttgtaccatcttctatccttgaagtacttgcaccaccaata 3167636  T
Q  117 cctagaattcccacccca 134  Q
    || |||||||| ||||||    
T  3167635 ccaagaattccaacccca 3167618  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 3156556 - 3156653
Alignment:
Q  17 acttgtagcaacatttgtagaagaatctccagattttataatagcaccaatcttgtcattcgtaccatcttcaatccttgaagtagttgaaccaccaa 114  Q
    ||||| ||||||||||||||||||||||||  |||||| ||||||||| || || | ||| |||||||||||||||||||||||| ||| ||||||||    
T  3156556 acttgcagcaacatttgtagaagaatctcctaattttagaatagcacctattttattatttgtaccatcttcaatccttgaagtacttgcaccaccaa 3156653  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 190
Target Start/End: Complemental strand, 2023302 - 2023129
Alignment:
Q  17 acttgtagcaacatttgtagaagaatctccagattttataatagcaccaatcttgtcattcgtaccatcttcaatccttgaagtagttgaaccaccaaat 116  Q
    |||||| | ||||||||||||||||||| || | |||| | ||| |||||| || | |||   |||||||||||||||| ||||||||| | | ||        
T  2023302 acttgttgtaacatttgtagaagaatcttcaaactttagattagtaccaattttattattttcaccatcttcaatccttaaagtagttgcatccccggta 2023203  T
Q  117 cctagaattcccaccccacggttactattactactctccatgtttctcaaaccaacaagagaaggatttaatat 190  Q
    ||||||||||| |||| |   ||||||||||| | |||||| |||||||||| |||||||||||| ||||||||    
T  2023202 cctagaattccaaccctagaattactattactgccctccatatttctcaaactaacaagagaagggtttaatat 2023129  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 127
Target Start/End: Original strand, 3138826 - 3138934
Alignment:
Q  19 ttgtagcaacatttgtagaagaatctccagattttataatagcaccaatcttgtcattcgtaccatcttcaatccttgaagtagttgaaccaccaaatcc 118  Q
    |||||||||| |||||||||||||||||  ||| || |||||||||||| || | ||  ||||||| ||| ||| |||||||||||| ||||||||  ||    
T  3138826 ttgtagcaacctttgtagaagaatctcccaattctaaaatagcaccaattttattatatgtaccatattcgatctttgaagtagttgcaccaccaatacc 3138925  T
Q  119 tagaattcc 127  Q
    |||| ||||    
T  3138926 tagatttcc 3138934  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 34 - 127
Target Start/End: Original strand, 7490840 - 7490933
Alignment:
Q  34 tagaagaatctccagattttataatagcaccaatcttgtcattcgtaccatcttcaatccttgaagtagttgaaccaccaaatcctagaattcc 127  Q
    ||||||||||||||  ||||| |||||||||||| || | ||| |||||||||||||| ||||||||| |||  |||||||| |||||| ||||    
T  7490840 tagaagaatctccaagttttagaatagcaccaattttattatttgtaccatcttcaattcttgaagtacttgctccaccaaaacctagagttcc 7490933  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 7484085 - 7484179
Alignment:
Q  33 gtagaagaatctccagattttataatagcaccaatcttgtcattcgtaccatcttcaatccttgaagtagttgaaccaccaaatcctagaattcc 127  Q
    ||||||||||| |||  ||||| |||||||||||| || | ||| |||||||||| ||| ||||||||| |||  |||||||| |||||| ||||    
T  7484085 gtagaagaatcaccaagttttagaatagcaccaattttattatttgtaccatctttaattcttgaagtacttgctccaccaaaacctagagttcc 7484179  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 9011746 - 9011794
Alignment:
Q  79 taccatcttcaatccttgaagtagttgaaccaccaaatcctagaattcc 127  Q
    |||||||||||||| ||||| |||||| ||||||||| |||||||||||    
T  9011746 taccatcttcaatctttgaactagttgcaccaccaaaccctagaattcc 9011794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 23852603 - 23852503
Alignment:
Q  17 acttgtagcaacatttgtagaagaatctccagattttataatagcaccaa---tcttgtcattcgtaccatcttcaatccttgaagtagttgaaccacca 113  Q
    ||||||||||| ||||||||||||||||||  |||||| |||||||||||   | || | ||| ||||||||||| || ||||||||||||| ||| |||    
T  23852603 acttgtagcaatatttgtagaagaatctcccaattttaaaatagcaccaattttattattatttgtaccatcttcgattcttgaagtagttgcaccgcca 23852504  T
Q  114 a 114  Q
    |    
T  23852503 a 23852503  T

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