View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7559_high_3 (Length: 579)
Name: NF7559_high_3
Description: NF7559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7559_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 18 - 567
Target Start/End: Original strand, 45593610 - 45594159
Alignment:
| Q |
18 |
atatcagagtatttgcctttctctattgaagagactaactaacatagtggatgtttggtatcacggtttgtcaaagcattggtatcaggatggctcaccg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
45593610 |
atatcagagtatttgcctttctctattgaagagactaactaacatagtggatgtttggtatcacggtttgtcaaagcattggtatcaggatggctcattg |
45593709 |
T |
|
| Q |
118 |
tgataccaaacacgcacttagtcacatctaccatcaaggagattcaagaaattgtcggtatgtcccaggaaacctatttcatcgggcatacgcagtaggt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
45593710 |
tgataccaaacacgcacttagtcacatctaccatcaaggagattcaagaaattgtcagtatgtcccaggaaacctatttcatcaggcatgcgcagtaggt |
45593809 |
T |
|
| Q |
218 |
gcttcagtgcagaatcagaagtatcaagaaattcataatttcctgaatctgaaccagatatatcatcttcaatcttcagtttgtagctactggcattttg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
45593810 |
gcttcagtgcagaatcagaagtatcaagaaattcataatttcctgaatctgaaccagatatatcatcttcaagcttcagtttgtagctactggcattttg |
45593909 |
T |
|
| Q |
318 |
ttcctgaatcaggttgacatcttcaagctttggtgttgacactttcaggctttgtgttccgttgtttttcacctgcaatgagacatctgaacatgattcc |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45593910 |
ttcctgaatcaggttgacatcttcaagctttggtgttgacactttcaggctttgtgttcggttgtttttcacctgcaatgagacatctgaacatgattcc |
45594009 |
T |
|
| Q |
418 |
tccaatgagacgatgctttgacacactactcctgcacgaaatttctctccaacatcagaatgccaaagttgaagaaagtaatcagggtatgttttagtcg |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45594010 |
tccaatgagacgatgctttgacacactactcctgcacggaatttgtctccaacatcagaatgccaaagttgaagaaagtaatcagggtatgttttagtcg |
45594109 |
T |
|
| Q |
518 |
tagagcctgaattaagcaaagtggactccaacgacagcctcgtctctgct |
567 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45594110 |
tagagcctgaattaagcaaagtggactccaacgacagcctcgtctctgct |
45594159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University